Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.9e-62 242.3 116 100.0
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 9.6e-59 229.9 112 97.3
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 4.8e-58 227.6 112 96.4
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 9.0e-57 223.4 112 94.6
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 4.8e-50 201.1 112 83.0
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 8.2e-50 200.3 113 85.0
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.4e-49 199.5 113 84.1
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 1.4e-49 199.5 113 81.4
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.4e-49 199.5 113 81.4
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 1.8e-49 199.1 113 83.2
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 1.8e-49 199.1 113 81.4
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.4e-49 198.7 112 81.2
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 4.1e-49 198.0 111 80.2
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 9.0e-49 196.8 112 79.5
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 4.5e-48 194.5 112 81.2
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 7.7e-48 193.7 112 79.5
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 7.7e-48 193.7 113 81.4
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 1.0e-47 193.4 113 80.5
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.3e-47 193.0 111 82.0
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.3e-47 193.0 111 82.0
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.3e-47 193.0 111 82.0
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 5.0e-47 191.0 113 77.9
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 8.5e-47 190.3 113 77.9
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 8.5e-47 190.3 113 77.9
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 8.5e-47 190.3 108 80.6
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 8.5e-47 190.3 113 77.0
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.4e-46 189.5 113 78.8
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.5e-46 188.7 114 78.1
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 4.2e-46 188.0 108 81.5
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 9.4e-46 186.8 113 77.0
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 9.4e-46 186.8 113 77.0
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 9.4e-46 186.8 113 78.8
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 1.2e-45 186.4 109 78.0
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.2e-45 186.4 112 74.1
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.6e-45 186.0 112 75.9
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 1.6e-45 186.0 113 76.1
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 2.1e-45 185.7 108 78.7
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.1e-45 185.7 113 79.6
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.1e-45 185.7 113 79.6
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.6e-45 184.9 112 75.0
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 3.6e-45 184.9 112 75.9
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 7.9e-45 183.7 114 75.4
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 7.9e-45 183.7 113 77.9
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.4e-44 183.0 108 75.0
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.4e-44 183.0 118 73.7
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.8e-44 182.6 109 79.8
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 1.8e-44 182.6 112 74.1
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 1.8e-44 182.6 113 73.5
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 2.3e-44 182.2 111 75.7
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 2.3e-44 182.2 108 76.9
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 3.0e-44 181.8 113 74.3
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 3.0e-44 181.8 118 72.9
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.0e-44 181.8 113 76.1
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 3.0e-44 181.8 107 77.6
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 3.0e-44 181.8 107 77.6
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 3.0e-44 181.8 113 70.8
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 3.9e-44 181.4 112 71.4
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 5.1e-44 181.0 108 75.9
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 6.7e-44 180.6 114 73.7
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 6.7e-44 180.6 107 77.6
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 8.8e-44 180.3 113 77.0
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 8.8e-44 180.3 111 76.6
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 2.0e-43 179.1 117 71.8
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 2.5e-43 178.7 112 71.4
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 4.3e-43 177.9 109 74.3
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 5.7e-43 177.6 113 76.1
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 9.7e-43 176.8 105 79.0
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 1.7e-42 176.0 110 70.0
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 2.8e-42 175.3 109 74.3
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 3.7e-42 174.9 108 72.2
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 4.8e-42 174.5 112 73.2
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 6.3e-42 174.1 108 71.3
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 8.2e-42 173.7 105 76.2
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 8.2e-42 173.7 116 69.8
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.1e-41 173.3 106 72.6
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.1e-41 173.3 105 76.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.1e-41 173.3 112 72.3
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.4e-41 172.2 114 68.4
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 2.4e-41 172.2 118 68.6
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 2.4e-41 172.2 112 72.3
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 5.3e-41 171.0 112 68.8
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 5.3e-41 171.0 116 69.8
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 9.1e-41 170.2 109 73.4
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 9.1e-41 170.2 108 68.5
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.2e-40 169.9 110 65.5
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 1.5e-40 169.5 108 74.1
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.0e-40 169.1 111 72.1
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 3.4e-40 168.3 106 73.6
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 3.4e-40 168.3 107 73.8
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 4.5e-40 167.9 95 82.1
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 7.7e-40 167.2 107 72.0
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.0e-39 166.8 112 70.5
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 1.3e-39 166.4 132 61.4
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.2e-39 165.6 105 75.2
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 3.8e-39 164.9 98 75.5
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 3.8e-39 164.9 94 80.9
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 6.5e-39 164.1 93 81.7
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 8.5e-39 163.7 110 71.8
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 3.2e-38 161.8 97 75.3
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 7.2e-38 160.6 108 67.6
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.2e-37 159.8 112 67.0
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 6.1e-37 157.5 113 67.3
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.4e-36 156.4 110 69.1
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 3.0e-36 155.2 94 72.3
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 3.9e-36 154.8 108 64.8
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 1.1e-35 153.3 110 69.1
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.5e-35 152.9 99 70.7
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 2.6e-35 152.1 110 67.3
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 3.3e-35 151.8 110 68.2
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 3.3e-35 151.8 110 68.2
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 3.3e-35 151.8 110 68.2
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 3.3e-35 151.8 110 67.3
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 7.4e-35 150.6 95 73.7
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 1.7e-34 149.4 94 73.4
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.7e-34 149.4 94 73.4
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 2.8e-34 148.7 110 66.4
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 8.2e-34 147.1 110 66.4
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 8.2e-34 147.1 110 66.4
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.4e-33 146.4 110 65.5
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.4e-33 146.4 110 65.5
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 9.1e-33 143.7 110 64.5
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 4.2e-30 134.8 85 71.8
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 2.1e-29 132.5 98 66.3
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 8.0e-29 130.6 110 58.2
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 1.8e-28 129.4 108 62.0
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 2.8e-26 122.1 72 75.0
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 3.1e-25 118.6 86 57.0
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.8e-20 102.8 124 42.7
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 5.7e-19 97.8 108 46.3
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 1.1e-17 93.6 124 39.5
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 4.5e-16 88.2 95 42.1
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 5.5e-14 81.3 95 44.2
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.6e-13 79.7 57 64.9
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.7e-13 79.0 52 69.2
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.3e-10 70.1 46 65.2
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 4.5e-08 61.6 39 69.2


User provided reference genes

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