Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 4.3e-86 321.2 158 100.0
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 6.9e-84 313.9 158 98.1
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 1.3e-82 309.7 159 96.9
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 2.2e-74 282.3 156 87.8
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 5.0e-74 281.2 156 87.2
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 5.0e-74 281.2 156 87.2
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 1.1e-73 280.0 160 88.1
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.5e-73 278.9 155 86.5
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.5e-73 278.9 156 87.8
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 3.2e-73 278.5 159 85.5
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 5.5e-73 277.7 157 84.1
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.6e-72 276.2 155 87.1
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 1.6e-72 276.2 158 83.5
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 7.9e-72 273.9 155 85.2
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 7.9e-72 273.9 154 87.0
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 7.9e-72 273.9 154 87.0
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.0e-71 273.5 156 85.9
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.0e-71 273.5 160 85.6
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.3e-71 272.3 154 86.4
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 1.1e-70 270.0 160 83.8
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.0e-70 269.2 161 83.9
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 2.0e-70 269.2 156 84.0
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 3.3e-70 268.5 156 84.0
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 3.3e-70 268.5 156 84.0
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 3.3e-70 268.5 152 84.2
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 4.3e-70 268.1 156 82.1
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 5.7e-70 267.7 151 84.1
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 7.4e-70 267.3 156 80.1
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 1.3e-69 266.5 156 81.4
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 1.7e-69 266.2 156 83.3
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.7e-69 266.2 156 81.4
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 2.2e-69 265.8 156 82.1
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 2.2e-69 265.8 155 83.9
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.2e-69 265.8 156 84.6
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 2.2e-69 265.8 151 85.4
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.8e-69 265.4 156 84.6
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.7e-69 265.0 156 84.0
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 4.8e-69 264.6 156 80.8
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 8.2e-69 263.8 155 81.3
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.4e-68 263.1 158 83.5
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.4e-68 263.1 155 81.9
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 1.8e-68 262.7 157 80.9
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 5.3e-68 261.2 152 84.2
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 5.3e-68 261.2 161 79.5
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 6.9e-68 260.8 154 81.8
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 6.9e-68 260.8 156 80.8
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.2e-67 260.0 151 80.8
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 1.5e-67 259.6 159 78.0
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.5e-67 259.6 156 81.4
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 2.0e-67 259.2 156 80.1
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 2.0e-67 259.2 161 78.9
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 2.6e-67 258.8 155 82.6
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 3.4e-67 258.5 157 78.3
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 4.5e-67 258.1 151 81.5
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 7.7e-67 257.3 150 82.0
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 7.7e-67 257.3 150 82.0
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.0e-66 256.9 159 78.6
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.3e-66 256.5 156 81.4
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.7e-66 256.1 160 80.6
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 1.7e-66 256.1 150 82.0
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 2.2e-66 255.8 160 75.0
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 8.5e-66 253.8 157 78.3
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 1.4e-65 253.1 155 78.1
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 1.9e-65 252.7 159 78.0
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 2.5e-65 252.3 153 76.5
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 3.2e-65 251.9 149 79.9
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 3.2e-65 251.9 148 82.4
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 4.2e-65 251.5 155 76.8
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 5.5e-65 251.1 150 78.7
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 7.2e-65 250.8 152 80.9
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 9.4e-65 250.4 152 79.6
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 1.2e-64 250.0 152 80.3
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.6e-64 249.6 155 76.1
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 3.6e-64 248.4 151 78.8
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 3.6e-64 248.4 158 75.3
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.7e-64 248.1 154 79.2
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 4.7e-64 248.1 156 77.6
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 7.9e-64 247.3 154 78.6
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.0e-63 246.9 156 77.6
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 1.4e-63 246.5 175 70.3
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.4e-63 246.5 149 79.9
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 1.8e-63 246.1 157 73.9
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.3e-63 245.7 155 78.1
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 3.0e-63 245.4 161 73.9
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.0e-63 245.4 148 81.1
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 3.9e-63 245.0 138 85.5
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 6.7e-63 244.2 153 72.5
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 6.7e-63 244.2 155 78.7
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 6.7e-63 244.2 176 69.9
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.1e-62 243.4 150 78.7
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 1.5e-62 243.0 150 78.0
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.0e-62 242.7 137 85.4
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 7.4e-62 240.7 173 70.5
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 2.2e-61 239.2 159 75.5
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 8.2e-61 237.3 143 76.9
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 1.4e-60 236.5 157 75.8
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 1.4e-60 236.5 144 77.8
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 9.1e-60 233.8 140 77.1
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 9.1e-60 233.8 156 74.4
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.7e-58 229.6 156 75.0
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.2e-58 229.2 112 97.3
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 6.5e-58 227.6 155 72.9
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 4.2e-57 224.9 142 78.2
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.2e-56 223.4 146 74.0
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 1.6e-56 223.0 157 72.6
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 2.1e-56 222.6 153 71.2
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 4.7e-56 221.5 157 72.0
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 4.7e-56 221.5 157 72.0
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 6.1e-56 221.1 157 72.0
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.4e-55 219.9 155 71.0
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 2.3e-55 219.2 141 75.9
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 2.3e-55 219.2 141 75.9
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.1e-54 216.9 157 70.7
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.1e-54 216.9 157 70.7
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.5e-54 216.5 157 70.1
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.5e-54 216.5 157 70.1
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 2.0e-54 216.1 199 57.3
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 4.4e-54 214.9 155 69.7
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 7.5e-54 214.2 128 79.7
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.8e-52 209.5 157 68.8
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 2.4e-52 209.1 151 72.2
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 5.0e-50 201.4 154 61.7
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.5e-46 189.9 125 72.0
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 7.7e-43 177.6 120 65.8
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 4.0e-39 165.2 120 69.2
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 9.2e-36 154.1 89 82.0
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 2.7e-35 152.5 151 53.6
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 1.6e-32 143.3 138 50.7
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 3.6e-32 142.1 89 74.2
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 3.7e-29 132.1 98 67.3
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 3.2e-28 129.0 82 75.6
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 9.2e-28 127.5 138 48.6
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 5.9e-27 124.8 72 77.8
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 6.4e-21 104.8 124 44.4
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 3.9e-18 95.5 124 41.1
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 2.2e-13 79.7 53 77.4
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 4.9e-13 78.6 48 75.0


User provided reference genes

Program Settings