Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.1e-60 236.5 120 100.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.4e-60 235.3 120 99.2
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.1e-54 216.5 129 86.8
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 5.7e-54 214.2 128 85.9
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.4e-54 213.8 128 85.9
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 9.7e-54 213.4 130 86.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.6e-53 212.6 127 85.8
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.2e-53 212.2 128 83.6
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 2.8e-53 211.8 132 84.8
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 8.2e-53 210.3 128 85.2
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.1e-52 209.9 127 84.3
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.4e-52 209.5 123 87.8
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.8e-52 209.1 124 84.7
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.4e-52 208.8 128 82.0
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.1e-52 208.4 120 89.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.2e-51 206.5 128 82.8
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 4.5e-51 204.5 127 82.7
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 4.5e-51 204.5 120 84.2
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 7.7e-51 203.8 128 83.6
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 7.7e-51 203.8 128 82.0
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 7.7e-51 203.8 127 82.7
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.0e-50 203.4 128 82.0
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.0e-50 203.4 128 82.0
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.3e-50 203.0 127 81.9
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.3e-50 203.0 128 83.6
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.7e-50 202.6 123 82.9
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.7e-50 202.6 123 82.9
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 3.8e-50 201.4 128 82.0
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 3.8e-50 201.4 127 81.9
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 5.0e-50 201.1 131 82.4
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 5.0e-50 201.1 129 81.4
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.4e-49 199.5 128 79.7
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.5e-49 198.7 125 81.6
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.5e-49 198.7 124 83.9
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.2e-49 198.4 122 82.8
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 4.2e-49 198.0 122 83.6
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 4.2e-49 198.0 128 78.9
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.5e-49 197.6 131 81.7
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 5.5e-49 197.6 121 81.8
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 5.5e-49 197.6 121 81.8
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.1e-48 195.7 128 82.0
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.1e-48 195.7 123 81.3
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 3.6e-48 194.9 128 75.8
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.6e-48 194.9 122 81.1
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 6.1e-48 194.1 126 79.4
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.0e-47 193.4 126 81.0
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.0e-47 193.4 126 81.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.0e-47 193.4 128 79.7
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.3e-47 192.2 128 76.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.3e-47 192.2 131 77.9
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 3.9e-47 191.4 127 78.7
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.1e-47 191.0 128 75.8
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 5.1e-47 191.0 124 76.6
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.1e-46 189.9 130 79.2
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.5e-46 189.5 127 81.1
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.5e-46 189.5 127 81.1
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 2.0e-46 189.1 128 76.6
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.5e-46 188.7 122 80.3
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.5e-46 188.7 122 80.3
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.5e-46 188.7 122 80.3
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.5e-46 188.7 128 77.3
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.3e-46 188.3 120 75.8
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 5.7e-46 187.6 125 78.4
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 7.4e-46 187.2 121 78.5
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 9.7e-46 186.8 128 75.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.7e-45 186.0 129 76.7
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.7e-45 186.0 130 75.4
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-45 185.7 128 76.6
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-45 185.7 128 78.9
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.2e-45 185.7 120 75.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 2.8e-45 185.3 126 78.6
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.8e-45 185.3 127 76.4
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.8e-45 184.5 120 75.8
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 4.8e-45 184.5 129 78.3
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 8.2e-45 183.7 129 76.0
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 8.2e-45 183.7 121 76.9
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.1e-44 183.3 132 75.8
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-44 183.3 128 75.8
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.4e-44 183.0 134 74.6
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.4e-44 182.2 121 78.5
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 4.1e-44 181.4 125 79.2
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.3e-44 181.0 129 74.4
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 6.9e-44 180.6 130 73.8
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 6.9e-44 180.6 130 73.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 9.1e-44 180.3 129 76.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 9.1e-44 180.3 126 75.4
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 9.1e-44 180.3 130 73.8
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 9.1e-44 180.3 130 73.8
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 9.1e-44 180.3 117 79.5
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 9.1e-44 180.3 117 80.3
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.5e-43 179.5 130 73.1
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.5e-43 179.5 129 75.2
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.5e-43 179.5 128 75.8
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.5e-43 179.5 129 78.3
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.0e-43 179.1 124 75.8
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.6e-43 178.7 124 79.0
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 5.9e-43 177.6 116 77.6
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.9e-43 177.6 118 76.3
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.7e-43 177.2 123 77.2
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.7e-43 177.2 122 79.5
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.3e-42 176.4 101 87.1
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.2e-42 175.6 124 79.0
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 3.8e-42 174.9 125 75.2
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 6.5e-42 174.1 129 72.1
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 6.5e-42 174.1 129 72.1
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 6.5e-42 174.1 129 72.1
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.1e-41 173.3 133 70.7
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.4e-41 172.9 124 75.0
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.4e-41 172.9 122 77.0
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.4e-41 172.9 132 72.7
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.2e-41 171.4 123 74.0
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 4.2e-41 171.4 120 73.3
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 9.4e-41 170.2 121 75.2
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 9.4e-41 170.2 121 75.2
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 9.4e-41 170.2 118 72.9
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.2e-40 169.9 119 73.9
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 2.1e-40 169.1 121 76.9
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.7e-40 168.7 96 85.4
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.7e-40 168.7 96 88.5
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 6.1e-40 167.5 103 82.5
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.0e-39 166.8 122 73.0
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.3e-39 165.6 121 69.4
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 5.1e-39 164.5 122 70.5
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.1e-38 163.3 122 70.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 5.7e-38 161.0 122 69.7
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.8e-37 158.7 121 65.3
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 6.3e-37 157.5 122 68.0
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.7e-34 149.4 115 69.6
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 8.5e-34 147.1 119 58.8
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.1e-33 146.7 125 65.6
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.4e-33 146.4 87 81.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.9e-33 146.0 122 63.9
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 3.2e-33 145.2 126 62.7
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 2.1e-32 142.5 120 62.5
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.9e-31 138.3 93 74.2
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.2e-29 132.5 94 75.5
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.2e-29 132.5 86 79.1
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 3.7e-29 131.7 83 77.1
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 6.3e-29 131.0 124 61.3
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 2.6e-27 125.6 109 64.2
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 4.5e-27 124.8 109 62.4
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-25 120.2 91 69.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.9e-25 119.4 69 88.4
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 4.2e-25 118.2 120 60.0
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.2e-24 116.7 122 56.6
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.8e-23 112.8 120 56.7
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.4e-22 108.2 71 76.1
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.2e-21 105.9 78 71.8
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 7.7e-19 97.4 98 51.0
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.9e-18 95.5 91 59.3
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.2e-17 91.7 46 100.0
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.2e-17 91.7 69 71.0
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 3.0e-15 85.5 106 44.3
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 5.7e-14 81.3 68 57.4
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.8e-08 62.4 71 47.9


User provided reference genes

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