Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 9.2e-47 189.9 97 100.0
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.2e-33 146.4 97 76.3
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.7e-32 142.5 97 76.3
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 1.2e-30 136.3 101 75.2
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 2.7e-30 135.2 94 76.6
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 4.6e-30 134.4 101 75.2
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 7.9e-30 133.7 98 73.5
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.9e-28 129.0 96 69.8
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.8e-26 122.5 100 68.0
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 2.4e-26 122.1 100 63.0
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 5.3e-26 120.9 99 65.7
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 9.0e-26 120.2 95 68.4
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 2.0e-25 119.0 95 68.4
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.6e-25 118.6 95 67.4
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 2.6e-25 118.6 94 66.0
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 3.4e-25 118.2 100 66.0
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 4.5e-25 117.9 100 66.0
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.3e-24 116.3 91 69.2
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 3.8e-24 114.8 97 64.9
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 1.4e-23 112.8 97 61.9
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 4.2e-23 111.3 100 61.0
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 4.2e-23 111.3 97 62.9
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 1.2e-22 109.8 94 63.8
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 1.2e-22 109.8 97 60.8
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 2.1e-22 109.0 106 59.4
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.7e-22 108.6 94 61.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 3.5e-22 108.2 99 63.6
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 3.5e-22 108.2 99 63.6
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 3.5e-22 108.2 97 59.8
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 4.6e-22 107.8 103 58.3
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 6.0e-22 107.5 94 61.7
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 7.9e-22 107.1 100 51.0
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 7.9e-22 107.1 100 53.0
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.3e-21 105.5 99 61.6
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.9e-21 104.8 102 57.8
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 3.9e-21 104.8 99 57.6
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 3.9e-21 104.8 97 59.8
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 5.1e-21 104.4 100 52.0
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 8.7e-21 103.6 100 53.0
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 8.7e-21 103.6 100 52.0
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 8.7e-21 103.6 95 53.7
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.1e-20 103.2 102 55.9
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.9e-20 102.4 100 56.0
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 3.3e-20 101.7 97 58.8
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 5.6e-20 100.9 94 50.0
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 5.6e-20 100.9 98 53.1
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 5.6e-20 100.9 94 52.1
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 5.6e-20 100.9 106 54.7
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 9.6e-20 100.1 100 58.0
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 2.1e-19 99.0 102 52.0
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 2.1e-19 99.0 111 56.8
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 3.7e-19 98.2 97 55.7
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 3.7e-19 98.2 97 55.7
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.1e-18 96.7 110 56.4
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.8e-18 95.9 98 54.1
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 2.4e-18 95.5 96 59.4
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 2.4e-18 95.5 81 64.2
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.4e-18 95.5 95 56.8
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 4.0e-18 94.7 74 67.6
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 4.0e-18 94.7 93 55.9
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 5.3e-18 94.4 111 54.1
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 6.9e-18 94.0 104 54.8
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 9.0e-18 93.6 100 59.0
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.2e-17 93.2 102 56.9
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 2.0e-17 92.4 110 54.5
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 2.6e-17 92.0 98 52.0
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 4.5e-17 91.3 122 45.9
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 4.5e-17 91.3 78 57.7
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 5.8e-17 90.9 103 50.5
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 5.8e-17 90.9 103 57.3
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 1.0e-16 90.1 125 47.2
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.0e-16 90.1 103 53.4
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 1.3e-16 89.7 95 52.6
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.3e-16 89.7 98 54.1
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 1.3e-16 89.7 100 52.0
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.2e-16 89.0 94 56.4
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 2.9e-16 88.6 77 58.4
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 2.9e-16 88.6 100 52.0
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 4.9e-16 87.8 105 55.2
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 6.5e-16 87.4 79 60.8
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 8.4e-16 87.0 90 51.1
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 8.4e-16 87.0 90 51.1
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 1.9e-15 85.9 90 50.0
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.5e-15 85.5 95 52.6
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 3.2e-15 85.1 89 49.4
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 3.2e-15 85.1 104 51.0
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 4.2e-15 84.7 91 49.5
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 4.2e-15 84.7 73 60.3
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 9.3e-15 83.6 104 49.0
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 9.3e-15 83.6 104 49.0
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 9.3e-15 83.6 99 46.5
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 1.2e-14 83.2 90 51.1
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.1e-14 82.4 105 52.4
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 4.6e-14 81.3 56 66.1
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 6.0e-14 80.9 59 67.8
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 7.9e-14 80.5 65 63.1
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.0e-13 80.1 100 47.0
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 1.0e-13 80.1 74 58.1
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.0e-13 80.1 88 45.5
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 1.3e-13 79.7 105 51.4
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 1.8e-13 79.3 54 66.7
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 3.0e-13 78.6 84 54.8
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 1.1e-12 76.6 83 54.2
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 1.5e-12 76.3 54 63.0
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.5e-12 76.3 54 63.0
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 1.5e-12 76.3 54 63.0
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.5e-12 76.3 54 63.0
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 1.5e-12 76.3 79 55.7
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 1.9e-12 75.9 54 61.1
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 1.9e-12 75.9 54 61.1
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 1.9e-12 75.9 54 61.1
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.3e-12 75.1 82 53.7
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 4.3e-12 74.7 54 63.0
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 4.3e-12 74.7 54 63.0
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 5.7e-12 74.3 122 43.4
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 9.7e-12 73.6 83 54.2
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 9.7e-12 73.6 97 43.3
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 1.6e-11 72.8 53 60.4
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.8e-11 72.0 85 51.8
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 1.1e-10 70.1 82 48.8
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 1.8e-10 69.3 58 58.6
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 1.8e-10 69.3 58 58.6
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 1.8e-10 69.3 58 58.6
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 2.4e-10 68.9 47 70.2
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 4.1e-10 68.2 95 49.5
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 4.1e-10 68.2 95 49.5
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 5.3e-10 67.8 77 53.2
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 6.9e-10 67.4 70 54.3
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 1.5e-09 66.2 54 61.1
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 5.9e-09 64.3 46 67.4
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 1.3e-08 63.2 77 46.8
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 6.5e-08 60.8 79 46.8
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 6.5e-08 60.8 47 66.0
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 1.9e-07 59.3 53 56.6
unitig_749.g13516 Utricularia gibba HOM05D005475 ORTHO05D006575 5.5e-07 57.8 52 57.7
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 3.6e-06 55.1 96 49.0
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 3.6e-06 55.1 58 55.2


User provided reference genes

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