Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 4.6e-77 291.2 152 100.0
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 5.6e-75 284.3 152 97.4
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 3.6e-53 211.8 150 76.7
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 4.6e-53 211.5 158 74.7
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 1.8e-52 209.5 153 72.5
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 8.8e-52 207.2 145 76.6
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 8.8e-52 207.2 145 76.6
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 9.7e-51 203.8 152 72.4
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 1.3e-50 203.4 153 69.9
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 1.7e-50 203.0 151 69.5
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 2.2e-50 202.6 153 71.9
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 3.7e-50 201.8 153 74.5
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 6.3e-50 201.1 153 73.9
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 6.3e-50 201.1 161 72.7
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 8.2e-50 200.7 152 71.7
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 8.2e-50 200.7 152 71.7
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.1e-49 200.3 156 71.8
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 1.4e-49 199.9 153 70.6
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 1.8e-49 199.5 152 71.7
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.4e-49 199.1 152 71.7
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 6.9e-49 197.6 152 71.1
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 1.2e-48 196.8 155 71.6
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 2.0e-48 196.1 156 71.8
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 2.0e-48 196.1 153 70.6
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 2.6e-48 195.7 153 69.9
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 5.9e-48 194.5 152 70.4
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 7.7e-48 194.1 152 69.7
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 1.7e-47 193.0 117 81.2
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 1.7e-47 193.0 154 72.1
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.7e-47 193.0 156 73.1
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 2.2e-47 192.6 153 69.3
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 2.9e-47 192.2 119 83.2
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 6.5e-47 191.0 153 71.9
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 1.1e-46 190.3 153 69.9
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.1e-46 190.3 156 71.8
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 1.1e-46 190.3 156 72.4
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 1.1e-46 190.3 154 70.8
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 1.4e-46 189.9 153 69.9
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 1.4e-46 189.9 153 69.9
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 2.5e-46 189.1 152 68.4
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 2.5e-46 189.1 156 71.2
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.5e-46 189.1 152 69.1
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 3.2e-46 188.7 155 71.6
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 5.5e-46 188.0 157 70.1
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 7.2e-46 187.6 117 79.5
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 7.2e-46 187.6 149 69.8
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 7.2e-46 187.6 149 67.8
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 9.4e-46 187.2 153 69.3
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 9.4e-46 187.2 156 71.2
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 1.2e-45 186.8 154 68.8
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 1.2e-45 186.8 130 77.7
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 1.6e-45 186.4 147 72.1
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 2.1e-45 186.0 157 66.9
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 2.7e-45 185.7 154 69.5
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 3.6e-45 185.3 150 72.0
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 3.6e-45 185.3 154 69.5
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 3.6e-45 185.3 157 69.4
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 4.7e-45 184.9 154 68.8
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 4.7e-45 184.9 150 70.0
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 6.1e-45 184.5 135 74.1
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 7.9e-45 184.1 152 69.7
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 1.4e-44 183.3 154 70.1
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 1.4e-44 183.3 118 81.4
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.8e-44 183.0 154 68.8
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 3.9e-44 181.8 154 69.5
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 5.2e-44 181.4 148 68.2
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 8.8e-44 180.6 154 68.2
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.1e-43 180.3 152 68.4
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.1e-43 180.3 152 68.4
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 1.1e-43 180.3 117 76.9
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 1.1e-43 180.3 153 67.3
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 2.6e-43 179.1 140 67.1
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 3.3e-43 178.7 150 66.0
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 4.4e-43 178.3 150 65.3
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 7.4e-43 177.6 120 78.3
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 7.4e-43 177.6 149 66.4
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 7.4e-43 177.6 150 66.0
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 1.3e-42 176.8 154 66.9
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 1.3e-42 176.8 154 66.9
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 1.3e-42 176.8 129 73.6
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 1.3e-42 176.8 119 78.2
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 1.7e-42 176.4 138 69.6
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 2.2e-42 176.0 111 77.5
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 2.8e-42 175.6 150 65.3
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 3.7e-42 175.3 128 72.7
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 3.7e-42 175.3 117 81.2
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 8.2e-42 174.1 156 66.0
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 8.2e-42 174.1 149 65.1
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 1.1e-41 173.7 153 67.3
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 1.8e-41 172.9 128 71.1
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 1.8e-41 172.9 150 66.7
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 9.1e-41 170.6 129 69.8
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 9.1e-41 170.6 154 66.2
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 2.6e-40 169.1 129 66.7
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 3.5e-40 168.7 150 62.0
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 5.9e-40 167.9 155 65.2
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 5.9e-40 167.9 170 57.6
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 5.9e-40 167.9 151 62.3
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 1.7e-39 166.4 132 69.7
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 3.8e-39 165.2 155 61.9
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 5.0e-39 164.9 151 64.2
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 6.5e-39 164.5 152 63.2
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 8.5e-39 164.1 119 72.3
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 5.5e-38 161.4 142 64.1
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 9.4e-38 160.6 137 62.0
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 2.1e-37 159.5 123 69.1
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 2.1e-37 159.5 123 69.1
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 3.6e-37 158.7 154 59.7
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 1.2e-35 153.7 136 59.6
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 1.5e-35 153.3 78 96.2
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 7.5e-35 151.0 141 61.0
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 2.2e-34 149.4 78 92.3
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 4.5e-32 141.7 92 73.9
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 3.8e-31 138.7 140 58.6
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 6.5e-31 137.9 86 82.6
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.5e-30 136.7 75 85.3
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 2.0e-27 126.3 127 55.1
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.3e-26 123.6 106 60.4
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 2.4e-25 119.4 128 54.7
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 5.4e-25 118.2 120 58.3
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 1.7e-23 113.2 127 58.3
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 1.5e-22 110.2 134 48.5
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 2.1e-21 106.3 75 65.3
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 1.0e-20 104.0 78 66.7
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 4.1e-17 92.0 83 51.8
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 3.5e-16 89.0 73 60.3
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 7.0e-09 64.7 36 91.7
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 1.5e-06 57.0 65 46.2


User provided reference genes

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