Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 0.0e+00 1876.3 944 100.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 0.0e+00 1766.1 948 94.7
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 0.0e+00 1262.3 951 70.7
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 0.0e+00 1227.6 952 67.8
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 0.0e+00 1184.5 947 68.5
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 0.0e+00 1087.4 1002 60.2
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 0.0e+00 1083.6 961 62.3
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1082.4 1003 59.9
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 4.0e-304 1048.1 957 60.5
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 2.2e-302 1042.3 991 58.7
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 6.4e-302 1040.8 969 59.8
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.9e-301 1039.3 989 59.0
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.6e-297 1025.0 958 59.6
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 8.1e-297 1023.8 968 59.0
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.4e-296 1023.1 1014 56.3
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.6e-295 1018.8 954 59.1
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.6e-295 1018.8 968 59.1
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.7e-294 1016.1 991 57.9
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.7e-294 1016.1 957 58.2
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 8.4e-294 1013.8 993 57.0
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.1e-293 1013.4 968 59.0
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 4.2e-293 1011.5 972 58.7
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 7.1e-293 1010.7 957 58.5
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.3e-291 1006.5 961 58.2
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 2.3e-291 1005.7 973 58.4
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.9e-290 1002.7 980 57.8
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 4.0e-288 995.0 987 55.8
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.2e-287 993.4 972 58.6
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.4e-285 986.5 957 58.3
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 5.4e-285 984.6 984 55.7
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 7.1e-285 984.2 981 56.2
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 3.5e-284 981.9 1004 55.1
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.3e-283 979.9 968 57.2
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.9e-282 976.1 993 56.2
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.8e-281 972.2 967 58.7
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 5.3e-280 968.0 969 58.3
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 1.5e-279 966.5 961 55.5
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.0e-279 966.1 963 56.7
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 4.9e-278 961.4 961 56.5
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 6.4e-278 961.1 971 57.9
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 2.7e-276 955.7 1049 52.4
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 7.9e-276 954.1 960 55.8
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.0e-275 953.7 961 55.7
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 2.5e-274 949.1 972 55.8
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 7.9e-268 927.5 983 53.4
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 1.0e-267 927.2 910 59.5
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.7e-266 921.4 998 52.6
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 3.7e-265 918.7 977 53.4
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.1e-264 917.1 1007 52.1
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 9.0e-264 914.1 995 52.7
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.2e-262 909.4 1007 53.8
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.9e-262 909.1 1001 53.5
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 6.5e-262 907.9 1012 51.5
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 8.4e-262 907.5 1112 49.3
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.9e-261 906.4 1013 52.2
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 3.2e-261 905.6 952 53.3
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.2e-261 905.2 1002 52.6
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 3.9e-259 898.7 955 53.6
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.3e-257 893.6 1156 47.1
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.6e-257 893.3 950 53.8
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 7.7e-255 884.4 964 53.6
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.1e-253 880.6 1009 51.7
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.1e-253 880.6 1083 47.8
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.2e-253 878.6 1036 49.9
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 7.2e-253 877.9 968 52.6
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 6.1e-252 874.8 942 51.4
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 7.9e-252 874.4 718 62.4
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 1.1e-250 870.5 959 53.8
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 6.3e-249 864.8 974 51.0
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.1e-248 864.0 1002 50.0
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 6.9e-248 861.3 964 51.3
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.6e-247 859.4 995 49.5
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.7e-246 856.7 1015 50.6
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.1e-245 854.0 960 50.7
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.1e-245 854.0 954 52.9
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.0e-243 847.4 968 51.0
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 5.1e-243 845.1 958 50.2
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 2.6e-242 842.8 961 50.7
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 7.4e-242 841.3 969 50.6
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 7.0e-240 834.7 988 49.8
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 2.2e-238 829.7 991 49.1
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 3.8e-238 828.9 965 49.7
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 6.5e-238 828.2 967 49.2
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 5.5e-237 825.1 966 49.8
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.1e-234 817.4 961 48.8
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 7.5e-234 814.7 1011 48.1
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 7.0e-232 808.1 1008 48.3
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.3e-230 803.9 956 48.8
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 8.5e-230 801.2 677 60.0
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 9.4e-229 797.7 982 49.0
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 6.8e-227 791.6 956 49.4
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.3e-225 787.3 981 48.5
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 3.1e-224 782.7 752 55.1
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.6e-223 780.4 669 59.8
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 1.3e-222 777.3 669 58.9
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 5.0e-222 775.4 954 48.4
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 8.5e-222 774.6 676 58.7
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 2.5e-221 773.1 957 48.5
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 7.2e-221 771.5 953 48.4
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.2e-220 770.8 674 59.5
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 6.8e-219 765.0 995 46.1
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.2e-218 764.2 670 59.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 9.8e-218 761.1 979 47.7
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 2.8e-217 759.6 975 47.2
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 6.3e-217 758.4 951 47.9
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 2.0e-215 753.4 689 58.1
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.7e-214 750.4 952 48.3
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.8e-208 730.3 969 47.3
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 7.3e-205 718.4 953 46.0
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 3.4e-202 709.5 681 54.3
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.5e-197 694.1 738 51.1
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 1.1e-195 688.0 680 54.0
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 8.9e-195 684.9 678 54.1
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 5.1e-182 642.5 1044 41.1
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.3e-174 617.1 1008 41.0
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 6.7e-166 589.0 709 46.4
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 4.5e-154 549.7 865 41.7
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.2e-151 541.6 627 47.8
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.4e-147 528.1 730 44.9
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.9e-128 464.5 688 41.7
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.4e-107 395.2 308 61.0
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.5e-104 385.2 522 38.9
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.1e-99 367.5 760 33.9
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 7.0e-99 366.3 481 39.9
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.9e-92 343.6 460 40.4
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.1e-75 287.3 321 57.3
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 6.2e-39 167.2 115 67.8
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 4.0e-38 164.5 115 67.0
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 2.1e-34 152.1 414 28.7
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.1e-26 124.0 177 43.5
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.3e-23 114.0 146 45.9
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 2.8e-15 88.6 140 39.3
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 3.7e-15 88.2 140 39.3
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 2.5e-11 75.5 80 55.0
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 9.4e-11 73.6 100 42.0
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.4e-09 69.7 103 40.8
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 2.6e-08 65.5 98 40.8


User provided reference genes

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