Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014735 Carpinus fangiana HOM05D000060 ORTHO05D000082 2.2e-23 111.3 51 100.0
CiPaw.04G130200 Carya illinoinensis HOM05D000060 ORTHO05D000082 4.3e-11 70.5 34 82.4
Actinidia30448 Actinidia chinensis HOM05D000060 ORTHO05D000082 1.3e-10 68.9 41 65.9
RcHm_v2.0_Chr2g0128781 Rosa chinensis HOM05D000060 ORTHO05D000082 1.6e-10 68.6 34 82.4
CANSAT21G1435 Cannabis sativa HOM05D000060 ORTHO05D000082 2.1e-10 68.2 35 80.0
CANSAT21G1438 Cannabis sativa HOM05D000060 ORTHO05D000082 2.1e-10 68.2 35 80.0
CiPaw.03G183600 Carya illinoinensis HOM05D000060 ORTHO05D000082 2.1e-10 68.2 35 82.9
EL10Ac8g18320 Beta vulgaris HOM05D000060 ORTHO05D000082 4.8e-10 67.0 40 65.0
Prupe.3G126300 Prunus persica HOM05D000060 ORTHO05D000082 6.2e-10 66.6 34 82.4
FvH4_6g26950 Fragaria vesca HOM05D000060 ORTHO05D000082 8.1e-10 66.2 34 79.4
FAN02G2286 Fragaria x ananassa HOM05D000060 ORTHO05D000082 8.1e-10 66.2 34 79.4
Rhsim04G0072500 Rhododendron simsii HOM05D000211 ORTHO05D002682 8.1e-10 66.2 35 74.3
Ah.01g002920 Amaranthus hybridus HOM05D000060 ORTHO05D000082 1.1e-09 65.9 40 70.0
CSS0006385 Camellia sinensis var. sinensis HOM05D000060 ORTHO05D000082 1.4e-09 65.5 35 71.4
AUR62024074 Chenopodium quinoa HOM05D000060 ORTHO05D000082 1.4e-09 65.5 35 74.3
AUR62035382 Chenopodium quinoa HOM05D000060 ORTHO05D000082 1.4e-09 65.5 35 74.3
QL08p040955 Quercus lobata HOM05D000060 ORTHO05D000082 1.4e-09 65.5 35 74.3
Oeu064836.1 Olea europaea HOM05D000060 ORTHO05D000082 1.8e-09 65.1 35 74.3
Thecc.01G240500 Theobroma cacao HOM05D000060 ORTHO05D000082 1.8e-09 65.1 33 72.7
Peaxi162Scf00384g00066 Petunia axillaris HOM05D000060 ORTHO05D000082 2.4e-09 64.7 49 46.9
Sc12g0003310 Simmondsia chinensis HOM05D000060 ORTHO05D000082 3.1e-09 64.3 35 74.3
CAN.G318.6 Capsicum annuum HOM05D000060 ORTHO05D000082 4.0e-09 63.9 41 58.5
Solyc12g010810.1 Solanum lycopersicum HOM05D000060 ORTHO05D000082 4.0e-09 63.9 41 53.7
Nitab4.5_0000537g0030 Nicotiana tabacum HOM05D000060 ORTHO05D000082 5.3e-09 63.5 41 53.7
Atru.chr6.2841 Acer truncatum HOM05D000211 ORTHO05D002682 9.0e-09 62.8 33 69.7
DCAR_013052 Daucus carota HOM05D000060 ORTHO05D000082 1.5e-08 62.0 49 53.1
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.0e-08 61.6 33 75.8
SGA_v2.0_scaffold109G31119 Striga asiatica HOM05D000104 ORTHO05D008076 2.0e-08 61.6 36 66.7
Migut.H02160 Erythranthe guttata HOM05D000060 ORTHO05D000082 2.6e-08 61.2 36 66.7
Gohir.A11G060100 Gossypium hirsutum HOM05D000060 ORTHO05D000082 2.6e-08 61.2 33 66.7
Gohir.D11G064200 Gossypium hirsutum HOM05D000060 ORTHO05D000082 2.6e-08 61.2 33 66.7
Gorai.007G069400 Gossypium raimondii HOM05D000060 ORTHO05D000082 2.6e-08 61.2 33 66.7
Nitab4.5_0006973g0080 Nicotiana tabacum HOM05D000060 ORTHO05D000082 4.4e-08 60.5 41 58.5
Lj8C105T13 Lonicera japonica HOM05D000060 ORTHO05D000082 5.8e-08 60.1 35 71.4
ClCG02G010110 Citrullus lanatus HOM05D000060 ORTHO05D000082 7.6e-08 59.7 33 72.7
SalBow7G1043 Salvia bowleyana HOM05D000060 ORTHO05D000082 1.3e-07 58.9 36 66.7
SalBow7G2299 Salvia bowleyana HOM05D000060 ORTHO05D000082 1.3e-07 58.9 36 66.7
MELO3C019314.2 Cucumis melo HOM05D000060 ORTHO05D000082 2.2e-07 58.2 33 66.7
CsaV3_2G034590 Cucumis sativus L. HOM05D000060 ORTHO05D000082 2.2e-07 58.2 33 66.7
DCAR_009764 Daucus carota HOM05D000060 ORTHO05D000082 2.2e-07 58.2 35 62.9
DCAR_021275 Daucus carota HOM05D000060 ORTHO05D000082 2.9e-07 57.8 35 65.7
Dinv02420 Davidia involucrata HOM05D000060 ORTHO05D000082 2.9e-07 57.8 36 66.7
Manes.12G091800 Manihot esculenta HOM05D000060 ORTHO05D000082 2.9e-07 57.8 33 66.7
Lsat_1_v5_gn_4_28400 Lactuca sativa HOM05D000060 ORTHO05D000082 3.8e-07 57.4 35 62.9
HanXRQChr17g0565281 Helianthus annuus HOM05D000060 ORTHO05D000082 4.9e-07 57.0 35 65.7
MD07G1305100 Malus domestica HOM05D000060 ORTHO05D000082 4.9e-07 57.0 31 77.4
Ciclev10017646m.g Citrus clementina HOM05D000060 ORTHO05D000082 6.4e-07 56.6 34 64.7
Duzib264G0988 Durio zibethinus HOM05D000060 ORTHO05D000082 8.4e-07 56.2 33 60.6
Lj3g0014591 Lotus japonicus HOM05D000060 ORTHO05D000082 8.4e-07 56.2 29 69.0
Aqoxy1G02232 Aquilegia oxysepala HOM05D000060 ORTHO05D000082 1.1e-06 55.8 48 47.9
HanXRQChr16g0526371 Helianthus annuus HOM05D000060 ORTHO05D000082 1.1e-06 55.8 35 62.9
Potri.013G123900 Populus trichocarpa HOM05D000060 ORTHO05D000082 1.9e-06 55.1 33 63.6
Lalb_Chr19g0135011 Lupinus albus HOM05D000060 ORTHO05D000082 4.2e-06 53.9 43 55.8
VMungo1127G1659 Vigna mungo HOM05D000060 ORTHO05D000082 4.2e-06 53.9 29 72.4
AL1G16290 Arabidopsis lyrata HOM05D000060 ORTHO05D000082 5.4e-06 53.5 33 63.6
AT1G06280 Arabidopsis thaliana HOM05D000060 ORTHO05D000082 5.4e-06 53.5 33 63.6
Carub.0001s0565 Capsella rubella HOM05D000060 ORTHO05D000082 5.4e-06 53.5 33 63.6
CARHR005860 Cardamine hirsuta HOM05D000060 ORTHO05D000082 5.4e-06 53.5 33 63.6
Sp1g05090 Schrenkiella parvula HOM05D000060 ORTHO05D000082 5.4e-06 53.5 33 63.6
Aa31LG1G7300 Aethionema arabicum HOM05D000060 ORTHO05D000082 7.1e-06 53.1 33 60.6
Lalb_Chr03g0029761 Lupinus albus HOM05D000060 ORTHO05D000082 7.1e-06 53.1 43 51.2
THA.LOC104800853 Tarenaya hassleriana HOM05D000060 ORTHO05D000082 7.1e-06 53.1 33 63.6
C08p51310 Brassica napus HOM05D001058 ORTHO05D000911 9.3e-06 52.8 33 63.6
BolC8t52657H Brassica oleracea HOM05D001058 ORTHO05D000911 9.3e-06 52.8 33 63.6


User provided reference genes

Program Settings