Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 0.0e+00 1461.4 900 100.0
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 0.0e+00 1233.8 900 82.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.5e-244 850.1 843 63.1
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 9.9e-228 794.3 892 56.7
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 7.4e-191 671.8 843 48.6
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 6.5e-187 658.7 837 53.5
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 8.0e-177 625.2 833 47.2
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.7e-174 617.5 860 52.2
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.1e-173 614.8 856 49.9
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.7e-171 607.4 834 46.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 3.8e-171 606.3 848 46.9
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 3.8e-171 606.3 834 46.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 8.5e-171 605.1 834 46.0
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.8e-165 587.4 854 47.2
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 7.0e-165 585.5 847 47.2
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.2e-161 574.7 830 45.3
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 3.6e-161 573.2 855 44.9
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.8e-160 570.9 793 44.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.2e-159 568.2 834 46.6
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.9e-158 562.8 818 41.8
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 5.4e-157 559.3 847 42.5
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 7.0e-157 558.9 809 45.7
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 9.2e-157 558.5 824 42.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.2e-157 558.5 821 42.0
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 5.0e-155 552.7 816 45.0
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 6.2e-153 545.8 828 44.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 6.2e-153 545.8 784 43.6
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.1e-152 543.5 803 44.0
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.2e-152 542.7 799 42.8
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-151 540.8 864 43.3
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 5.8e-151 539.3 849 43.1
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.9e-150 537.0 839 41.6
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.4e-149 533.9 836 45.3
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 5.4e-149 532.7 849 43.8
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 9.2e-149 531.9 842 48.2
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 3.5e-148 530.0 879 40.3
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 4.6e-148 529.6 825 44.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 4.6e-148 529.6 816 42.8
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 3.0e-147 526.9 855 41.4
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.5e-146 524.6 808 41.0
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.3e-146 523.1 844 47.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.2e-145 521.5 832 43.4
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 3.1e-144 516.9 829 41.7
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 5.2e-144 516.2 757 45.3
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 2.0e-143 514.2 831 40.2
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 2.6e-143 513.8 837 46.5
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 4.4e-143 513.1 818 46.2
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 7.1e-141 505.8 841 45.4
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.5e-138 498.0 839 43.9
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 4.3e-138 496.5 845 46.2
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 8.1e-137 492.3 786 40.6
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.1e-136 490.3 823 45.2
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.1e-133 481.9 819 39.7
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.5e-132 476.9 817 39.3
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 6.2e-129 466.1 833 40.2
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 5.2e-128 463.0 817 38.6
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.2e-127 461.8 830 39.2
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.9e-126 456.4 768 46.2
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 8.4e-126 455.7 832 39.4
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 4.3e-122 443.4 830 38.0
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 9.6e-122 442.2 795 44.3
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 2.8e-121 440.7 811 43.3
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 8.1e-121 439.1 867 43.8
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.0e-120 436.8 805 38.3
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.3e-118 431.8 821 37.0
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.2e-118 431.0 833 37.0
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 2.9e-118 430.6 806 38.0
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.6e-116 424.9 817 36.8
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 3.9e-115 420.2 815 41.2
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 5.6e-114 416.4 787 36.8
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.6e-114 416.4 704 37.6
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 2.8e-113 414.1 788 35.8
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 8.1e-113 412.5 833 36.3
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.8e-112 411.4 806 39.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 6.9e-112 409.5 831 36.1
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.5e-111 408.3 777 42.5
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.8e-111 406.4 844 34.7
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 7.1e-109 399.4 853 38.5
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 2.7e-108 397.5 770 39.0
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 6.0e-108 396.4 843 36.9
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.9e-108 396.0 813 37.1
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 5.1e-107 393.3 788 36.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.9e-106 391.3 834 35.1
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.9e-106 391.3 843 36.4
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 4.3e-106 390.2 784 38.9
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 4.3e-106 390.2 786 36.4
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 7.4e-106 389.4 833 38.1
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 3.7e-105 387.1 786 36.3
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 8.2e-105 386.0 786 36.3
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.6e-103 379.4 800 36.1
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.0e-102 379.0 817 33.8
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.2e-101 374.0 776 34.5
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.0e-99 369.0 875 34.1
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.8e-99 368.2 800 33.4
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.9e-99 367.1 902 33.5
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.4e-96 357.8 821 35.7
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.2e-95 355.5 808 33.3
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.1e-93 349.0 775 32.6
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 4.2e-93 347.1 769 34.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 5.5e-93 346.7 770 33.9
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 7.9e-92 342.8 789 33.8
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 6.7e-91 339.7 651 39.8
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 4.8e-89 333.6 814 33.9
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.0e-86 325.9 921 32.1
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.0e-86 325.9 830 34.2
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.4e-85 322.0 303 55.1
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.2e-84 318.9 410 50.5
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.0e-83 315.8 798 32.0
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 7.4e-82 309.7 810 37.9
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.3e-80 303.5 774 30.2
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.6e-76 290.8 277 52.3
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 2.3e-75 288.1 757 33.0
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.6e-74 284.6 785 30.8
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.7e-73 282.0 281 59.1
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.6e-71 275.4 634 39.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 8.5e-70 269.6 272 54.0
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.3e-62 245.7 834 29.4
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.7e-57 227.6 837 27.8
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 5.9e-55 220.3 785 26.0
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.5e-53 215.7 177 58.8
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.5e-53 214.9 375 43.2
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.0e-38 166.4 216 42.6
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 3.9e-38 164.5 145 60.7
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 6.6e-38 163.7 474 30.4
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 6.6e-38 163.7 150 58.7
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.5e-37 161.8 797 23.7
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.3e-37 161.4 198 49.0
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 3.2e-32 144.8 153 50.3
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.2e-28 132.9 808 30.3
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 9.9e-26 123.2 266 32.3
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 2.9e-25 121.7 269 33.8
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 8.3e-25 120.2 291 32.3
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 4.6e-23 114.4 291 30.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.9e-21 109.0 228 34.2
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 3.8e-17 94.7 220 32.3
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 8.4e-17 93.6 135 40.0
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 2.1e-12 79.0 76 55.3
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 9.3e-08 63.5 63 49.2
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 1.0e-06 60.1 64 53.1
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 1.0e-06 60.1 64 53.1
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.0e-06 60.1 170 31.8
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 3.0e-06 58.5 58 50.0
Zm00001eb152820 Zea mays HOM05D056051 ORTHO05D049612 6.6e-06 57.4 124 37.1


User provided reference genes

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