Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 3.2e-174 615.1 345 100.0
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 9.9e-160 567.0 342 93.6
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 2.0e-136 489.6 344 73.0
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 1.2e-117 427.2 344 64.0
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 6.7e-116 421.4 344 64.5
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 4.1e-113 412.1 344 70.1
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 5.3e-113 411.8 340 70.6
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 6.9e-113 411.4 344 64.2
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 8.5e-111 404.4 333 69.4
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 9.4e-110 401.0 345 65.5
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 8.8e-108 394.4 343 58.9
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 2.0e-107 393.3 315 63.5
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 2.6e-107 392.9 342 69.0
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 1.3e-106 390.6 344 59.0
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 2.8e-106 389.4 324 62.7
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 6.3e-106 388.3 316 68.0
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 4.1e-105 385.6 339 68.4
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.2e-104 384.0 340 67.9
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 5.9e-104 381.7 339 67.8
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 1.0e-103 380.9 340 67.6
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.0e-103 380.9 338 67.8
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 1.3e-103 380.6 343 64.7
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.7e-103 380.2 340 67.6
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 5.0e-103 378.6 340 66.5
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 8.5e-103 377.9 343 68.2
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 7.2e-102 374.8 302 74.2
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 1.2e-101 374.0 336 59.2
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 8.0e-101 371.3 343 64.1
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 1.0e-100 370.9 344 54.9
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 1.8e-100 370.2 333 58.3
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 3.0e-100 369.4 344 65.1
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 1.2e-99 367.5 344 63.7
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 2.0e-99 366.7 343 66.2
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 2.6e-99 366.3 316 61.4
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 2.6e-99 366.3 316 60.8
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 2.6e-99 366.3 341 67.4
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 5.7e-99 365.2 316 61.1
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 5.7e-99 365.2 344 62.5
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 2.2e-98 363.2 316 60.4
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 3.7e-98 362.5 342 57.9
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 3.1e-97 359.4 342 57.0
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 4.1e-97 359.0 342 57.0
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 1.6e-96 357.1 344 63.1
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 3.5e-96 355.9 341 62.5
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 3.5e-96 355.9 326 56.4
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 5.9e-96 355.1 310 60.3
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 7.7e-96 354.8 334 65.0
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 1.3e-95 354.0 350 56.6
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 1.7e-95 353.6 346 64.7
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 8.5e-95 351.3 344 59.6
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 1.6e-93 347.1 340 65.0
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 2.1e-93 346.7 337 63.2
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 2.7e-93 346.3 344 56.4
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.8e-92 343.6 310 58.4
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 8.8e-92 341.3 340 63.8
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 2.0e-91 340.1 321 62.9
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 3.4e-91 339.3 316 57.3
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 9.8e-91 337.8 345 62.9
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 3.7e-90 335.9 344 62.2
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 1.1e-89 334.3 340 63.2
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 3.1e-89 332.8 345 62.0
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 3.1e-89 332.8 322 64.0
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 3.1e-89 332.8 337 62.6
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 5.4e-89 332.0 341 61.9
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 7.7e-88 328.2 343 60.6
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 2.9e-87 326.2 344 52.6
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 3.8e-87 325.9 324 63.9
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 8.5e-87 324.7 317 64.4
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 8.5e-87 324.7 317 64.4
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.2e-85 320.9 315 61.6
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 1.2e-85 320.9 344 52.3
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 1.6e-85 320.5 317 63.7
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.1e-85 320.1 334 60.5
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 3.6e-85 319.3 338 61.5
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 3.6e-85 319.3 345 59.7
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 6.1e-85 318.5 338 61.2
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 6.1e-85 318.5 320 53.1
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 3.0e-84 316.2 348 57.8
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.4e-83 312.4 336 51.8
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 5.7e-83 312.0 320 52.2
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 3.7e-82 309.3 339 51.0
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 4.1e-81 305.8 331 53.8
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.3e-79 300.8 340 50.6
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 2.3e-79 300.1 331 50.2
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 4.3e-78 295.8 317 51.4
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 2.0e-75 287.0 313 51.1
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 2.2e-74 283.5 339 48.1
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 3.3e-70 269.6 316 56.6
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 5.2e-68 262.3 342 54.1
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 2.4e-65 253.4 342 43.6
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 3.5e-64 249.6 198 63.1
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.9e-62 243.8 230 66.1
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 4.0e-60 236.1 232 53.0
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.0e-55 221.5 184 59.2
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 2.0e-43 180.6 161 59.6
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 1.7e-39 167.5 163 56.4
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 2.9e-34 150.2 177 48.6
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 5.4e-33 146.0 183 61.7
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 5.1e-31 139.4 183 45.4
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 3.3e-30 136.7 113 61.9
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.8e-28 131.0 99 64.6
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 1.5e-19 101.3 104 53.8
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 5.5e-17 92.8 148 39.9
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.2e-13 80.9 113 46.9
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 6.5e-10 69.3 73 52.1


User provided reference genes

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