Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 5.4e-106 387.9 228 100.0
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 6.7e-96 354.4 228 93.0
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.4e-66 256.9 233 73.4
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 8.8e-56 221.1 235 67.2
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 5.4e-45 185.3 243 51.9
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 5.4e-45 185.3 243 51.9
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 5.5e-42 175.3 243 46.5
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.2e-41 174.1 245 47.3
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.7e-41 172.9 247 44.1
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.4e-40 170.6 264 53.4
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.4e-40 170.6 268 44.8
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 2.3e-40 169.9 276 44.6
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 8.8e-40 167.9 242 45.5
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.5e-39 167.2 257 54.1
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 3.4e-39 166.0 259 54.1
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 4.4e-39 165.6 231 53.7
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 9.8e-39 164.5 245 44.5
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 9.8e-39 164.5 250 50.4
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 1.7e-38 163.7 244 52.9
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 1.7e-38 163.7 238 50.0
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 2.2e-38 163.3 236 49.6
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 3.7e-38 162.5 268 44.0
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 3.7e-38 162.5 229 47.6
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.8e-37 160.2 245 44.5
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 2.4e-37 159.8 229 46.3
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 5.4e-37 158.7 240 45.4
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 5.4e-37 158.7 245 48.2
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 5.4e-37 158.7 227 43.6
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 7.0e-37 158.3 227 52.4
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.2e-36 157.5 232 46.1
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.6e-36 157.1 261 41.4
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 2.0e-36 156.8 240 52.9
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.7e-36 156.4 169 51.5
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.7e-36 156.4 247 47.4
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.9e-36 155.2 247 45.7
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.7e-35 153.7 240 45.4
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.7e-35 153.7 243 45.7
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 2.9e-35 152.9 226 56.2
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.9e-35 152.9 231 45.9
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 5.0e-35 152.1 227 48.9
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.6e-35 151.8 224 47.3
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 8.6e-35 151.4 265 43.8
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 8.6e-35 151.4 241 44.4
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.5e-34 150.6 225 45.3
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.5e-34 150.6 265 42.3
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.5e-34 150.6 246 41.9
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.5e-34 149.8 233 46.8
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 5.5e-34 148.7 83 83.1
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 7.2e-34 148.3 233 45.9
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 9.5e-34 147.9 232 48.7
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 9.5e-34 147.9 237 51.5
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.2e-33 147.5 238 42.0
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.6e-33 147.1 236 51.3
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 2.1e-33 146.7 90 76.7
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.6e-33 146.0 237 46.4
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 3.6e-33 146.0 100 70.0
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 4.7e-33 145.6 234 45.3
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 6.1e-33 145.2 235 42.6
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 1.0e-32 144.4 237 43.5
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.4e-32 144.1 237 50.2
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.8e-32 143.7 222 43.7
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 2.3e-32 143.3 246 45.1
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 6.8e-32 141.7 242 42.6
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.8e-32 141.7 218 43.6
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 6.8e-32 141.7 245 49.8
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 2.0e-31 140.2 192 46.9
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.4e-31 139.4 82 79.3
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 3.4e-31 139.4 100 70.0
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 4.4e-31 139.0 246 51.2
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 7.5e-31 138.3 240 43.3
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.3e-30 137.5 228 41.7
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.7e-30 137.1 232 41.8
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.2e-30 136.7 240 47.1
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 3.7e-30 136.0 253 38.7
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 4.9e-30 135.6 86 73.3
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 4.9e-30 135.6 96 67.7
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.3e-30 135.2 236 49.6
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 8.3e-30 134.8 232 44.4
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.1e-29 134.4 223 42.6
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.4e-29 134.0 229 41.5
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.8e-29 133.7 226 42.0
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 3.2e-29 132.9 190 45.8
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 3.2e-29 132.9 245 43.3
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 4.1e-29 132.5 229 49.3
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 9.2e-29 131.3 218 41.7
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.2e-28 131.0 223 40.8
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.6e-28 130.6 93 73.1
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.0e-28 130.2 242 40.1
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 3.5e-28 129.4 222 41.9
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 4.6e-28 129.0 275 45.8
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 4.6e-28 129.0 241 46.1
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 4.6e-28 129.0 178 47.2
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 7.8e-28 128.3 223 40.4
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.7e-27 127.1 222 42.3
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.7e-27 127.1 229 38.9
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 2.3e-27 126.7 234 38.5
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 2.9e-27 126.3 222 37.8
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 3.9e-27 125.9 221 41.2
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 3.9e-27 125.9 221 41.2
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 3.9e-27 125.9 259 48.3
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 3.9e-27 125.9 242 40.5
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 6.6e-27 125.2 229 44.5
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 8.6e-27 124.8 228 43.9
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.9e-26 123.6 222 40.5
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 2.5e-26 123.2 221 40.3
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 7.3e-26 121.7 221 39.8
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 1.2e-25 120.9 227 44.5
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.1e-25 120.2 222 40.1
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-25 120.2 227 43.6
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 2.1e-25 120.2 227 44.5
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 2.8e-25 119.8 68 79.4
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 8.0e-25 118.2 188 39.4
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.0e-24 117.9 90 63.3
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 1.8e-24 117.1 118 56.8
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.8e-24 117.1 228 41.7
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 4.0e-24 115.9 224 40.2
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 6.8e-24 115.2 224 37.1
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 2.0e-23 113.6 226 41.2
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 2.0e-23 113.6 116 50.9
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.6e-23 113.2 118 53.4
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 4.4e-23 112.5 88 65.9
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 9.8e-23 111.3 118 53.4
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.3e-22 110.9 222 38.3
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 2.9e-22 109.8 98 56.1
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 2.9e-22 109.8 86 64.0
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 3.7e-22 109.4 200 40.0
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 6.4e-22 108.6 105 51.4
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.4e-21 106.7 67 76.1
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-20 104.0 219 35.2
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-20 104.0 219 35.2
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 2.0e-20 103.6 77 63.6
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 2.7e-20 103.2 222 36.5
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.0e-19 101.3 221 34.8
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.0e-19 101.3 221 34.8
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 8.6e-19 98.2 91 53.8
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.3e-18 96.3 77 58.4
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 6.2e-17 92.0 185 36.2
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.8e-16 90.5 78 59.0
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.4e-13 80.1 191 39.8
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 8.1e-09 65.1 217 29.5


User provided reference genes

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