Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.6e-67 259.2 128 100.0
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.1e-47 193.4 209 54.5
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.8e-42 176.0 209 51.2
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 6.9e-42 174.1 209 49.8
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.1e-36 156.8 212 47.2
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 3.3e-36 155.2 210 46.2
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 9.7e-36 153.7 210 45.7
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.3e-35 153.3 201 47.3
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.3e-35 153.3 206 47.6
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.7e-35 152.9 207 46.9
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 3.7e-35 151.8 209 46.4
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 8.2e-35 150.6 209 45.9
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 1.1e-34 150.2 207 43.5
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.1e-34 150.2 211 43.6
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.1e-34 150.2 201 44.8
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.1e-34 150.2 206 46.1
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.4e-34 149.8 201 45.3
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.4e-34 149.8 210 44.3
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.8e-34 149.4 202 44.6
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.8e-34 149.4 212 45.8
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.8e-34 149.4 187 50.8
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.8e-34 149.4 199 46.2
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.1e-34 148.7 211 46.0
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.1e-34 148.7 211 46.0
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.1e-34 148.7 211 46.0
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.1e-34 148.7 211 43.1
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.1e-34 148.3 211 46.0
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 4.1e-34 148.3 217 45.2
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 6.9e-34 147.5 195 47.2
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 6.9e-34 147.5 200 46.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 6.9e-34 147.5 196 46.4
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 9.1e-34 147.1 206 42.7
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 9.1e-34 147.1 211 43.1
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.2e-33 146.7 193 44.6
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.2e-33 146.7 211 44.1
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.5e-33 146.4 200 46.0
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.0e-33 146.0 175 46.9
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.0e-33 146.0 209 42.1
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 2.0e-33 146.0 211 44.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.6e-33 145.6 193 45.1
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.6e-33 145.6 196 45.9
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 4.5e-33 144.8 193 45.1
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.5e-33 144.8 187 49.2
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.9e-33 144.4 196 45.4
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 7.7e-33 144.1 199 44.2
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.3e-32 143.3 196 46.9
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 3.8e-32 141.7 179 45.8
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 3.8e-32 141.7 207 44.4
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 5.0e-32 141.4 193 44.0
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 5.0e-32 141.4 195 46.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 5.0e-32 141.4 216 44.4
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 5.0e-32 141.4 213 43.2
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 8.5e-32 140.6 209 43.1
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.1e-31 140.2 204 42.6
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-31 140.2 195 46.2
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.4e-31 139.8 210 42.4
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.9e-31 139.4 195 44.6
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.5e-31 139.0 193 43.5
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.5e-31 139.0 193 43.5
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 3.2e-31 138.7 196 44.4
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 3.2e-31 138.7 199 43.2
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-31 138.3 194 46.4
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-31 138.3 194 46.4
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-31 138.3 194 46.4
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.2e-31 138.3 205 42.4
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 4.2e-31 138.3 208 42.8
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 7.2e-31 137.5 206 43.2
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 7.2e-31 137.5 206 43.2
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 9.4e-31 137.1 195 43.6
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 9.4e-31 137.1 195 44.6
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.6e-30 136.3 202 45.0
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.6e-30 136.3 210 42.4
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.1e-30 136.0 195 44.6
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.1e-30 136.0 195 44.6
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.7e-30 135.6 199 42.2
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 2.7e-30 135.6 210 42.9
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 3.6e-30 135.2 198 43.9
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 3.6e-30 135.2 209 44.0
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.6e-30 135.2 209 44.0
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 3.6e-30 135.2 213 43.7
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.6e-30 135.2 210 42.9
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.7e-30 134.8 194 45.4
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.7e-30 134.8 202 44.1
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 4.7e-30 134.8 207 43.0
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 4.7e-30 134.8 207 39.6
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 6.1e-30 134.4 195 43.1
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 6.1e-30 134.4 211 41.2
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 6.1e-30 134.4 196 44.4
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 6.1e-30 134.4 206 41.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.0e-29 133.7 205 43.9
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.3e-29 132.5 207 41.5
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.3e-29 132.5 198 43.4
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 5.1e-29 131.3 203 39.9
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 5.1e-29 131.3 185 42.7
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.1e-28 130.2 198 43.4
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.6e-28 129.0 201 41.8
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.4e-28 128.3 202 40.6
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.4e-28 127.5 195 44.1
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 7.4e-28 127.5 156 52.6
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.7e-28 127.1 203 39.4
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.3e-27 126.7 203 39.4
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.7e-27 126.3 196 43.4
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.8e-27 125.6 222 38.7
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 6.3e-27 124.4 187 43.3
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 8.2e-27 124.0 108 61.1
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.4e-26 123.2 187 42.8
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 2.4e-26 122.5 146 49.3
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 3.1e-26 122.1 202 41.1
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.0e-25 119.4 192 40.1
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.5e-25 118.6 193 40.4
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.5e-25 118.2 187 41.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.0e-24 117.1 188 41.5
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.3e-24 116.7 187 42.2
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.7e-24 116.3 196 39.3
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 2.9e-24 115.5 193 38.9
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 8.5e-24 114.0 102 63.7
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-23 113.6 214 37.4
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.9e-23 112.8 102 64.7
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.6e-22 109.8 60 91.7
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.6e-22 109.8 193 36.3
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.6e-22 109.8 193 36.8
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.1e-22 109.4 193 38.3
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 2.1e-22 109.4 177 41.2
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 8.0e-22 107.5 177 41.2
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.8e-21 106.3 60 86.7
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 3.0e-21 105.5 90 64.4
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-20 103.6 66 78.8
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.5e-20 103.2 187 37.4
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.5e-20 103.2 102 59.8
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 4.4e-20 101.7 208 35.6
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.7e-20 101.3 179 38.5
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 2.2e-16 89.4 60 73.3
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 2.2e-16 89.4 60 73.3
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.5e-15 85.9 45 91.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.6e-14 83.2 60 68.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 4.7e-14 81.6 80 57.5
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 5.2e-13 78.2 184 34.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 7.5e-12 74.3 50 74.0
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.7e-11 73.2 64 54.7
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 2.2e-11 72.8 97 48.5
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 2.2e-11 72.8 97 48.5
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.8e-11 72.4 82 46.3
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.0e-08 63.9 33 90.9
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 5.0e-08 61.6 46 58.7
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 4.2e-07 58.5 78 41.0
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.7e-06 55.8 68 50.0


User provided reference genes

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