Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 2.3e-87 325.5 158 100.0
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 2.6e-83 312.0 158 96.2
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 4.1e-76 288.1 156 86.5
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 1.6e-72 276.2 158 82.3
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 5.7e-70 267.7 157 80.3
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 1.7e-69 266.2 157 82.2
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 1.7e-69 266.2 158 78.5
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 2.8e-69 265.4 155 78.7
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 6.3e-69 264.2 159 79.2
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.4e-68 263.1 155 78.1
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 4.1e-68 261.5 158 77.8
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 3.4e-67 258.5 154 77.9
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 4.5e-67 258.1 158 77.8
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 2.2e-66 255.8 158 77.2
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 5.0e-66 254.6 161 77.0
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 6.5e-66 254.2 154 77.3
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 2.5e-65 252.3 155 74.8
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.5e-65 252.3 159 76.7
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 2.5e-65 252.3 158 75.9
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 4.2e-65 251.5 158 73.4
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 7.2e-65 250.8 159 75.5
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 7.2e-65 250.8 137 86.9
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 7.2e-65 250.8 154 76.6
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 9.4e-65 250.4 155 75.5
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 1.2e-64 250.0 155 74.8
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.6e-64 249.6 150 77.3
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.1e-64 249.2 155 74.2
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 3.6e-64 248.4 154 75.3
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 6.1e-64 247.7 159 74.8
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 6.1e-64 247.7 150 76.7
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 7.9e-64 247.3 155 74.8
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 7.9e-64 247.3 158 77.2
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 1.0e-63 246.9 155 74.2
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.0e-63 246.9 172 69.2
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 1.4e-63 246.5 158 75.3
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 1.4e-63 246.5 158 75.3
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.4e-63 246.5 155 74.8
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 1.8e-63 246.1 154 75.3
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.8e-63 246.1 157 73.2
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 2.3e-63 245.7 155 72.9
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 3.0e-63 245.4 154 76.0
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 8.8e-63 243.8 159 75.5
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 1.1e-62 243.4 150 77.3
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.0e-62 242.7 155 73.5
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 2.6e-62 242.3 155 74.8
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 7.4e-62 240.7 158 72.8
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 7.4e-62 240.7 157 69.4
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 7.4e-62 240.7 150 76.0
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 1.3e-61 240.0 155 71.6
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 1.3e-61 240.0 151 75.5
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 2.2e-61 239.2 154 73.4
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.8e-61 238.8 152 75.7
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 1.4e-60 236.5 155 71.0
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 1.4e-60 236.5 156 73.7
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.4e-60 236.5 158 66.5
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 4.1e-60 235.0 165 68.5
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 1.2e-59 233.4 150 70.0
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 1.6e-59 233.0 158 72.8
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 2.0e-59 232.6 158 73.4
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 2.0e-59 232.6 158 74.1
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 4.5e-59 231.5 158 69.0
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 1.0e-58 230.3 154 72.1
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 1.0e-58 230.3 158 73.4
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 1.7e-58 229.6 152 71.1
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 1.7e-58 229.6 158 72.8
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 2.2e-58 229.2 158 70.9
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 3.8e-58 228.4 159 67.3
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 3.8e-58 228.4 159 67.3
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 1.1e-57 226.9 155 67.7
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 1.5e-57 226.5 156 69.2
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 1.5e-57 226.5 156 68.6
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 1.9e-57 226.1 157 68.2
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 4.2e-57 224.9 155 65.8
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 5.5e-57 224.6 157 67.5
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 9.4e-57 223.8 154 69.5
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 1.2e-56 223.4 157 63.1
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 1.6e-56 223.0 159 67.3
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 1.6e-56 223.0 151 68.2
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.7e-56 222.2 158 69.6
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 8.0e-56 220.7 158 69.0
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 8.0e-56 220.7 154 67.5
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 2.3e-55 219.2 154 64.9
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 2.3e-55 219.2 150 66.0
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 3.0e-55 218.8 158 64.6
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 8.8e-55 217.2 154 66.9
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 1.1e-54 216.9 154 66.9
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 1.5e-54 216.5 154 66.9
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 9.7e-54 213.8 154 68.2
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 3.7e-53 211.8 144 67.4
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 7.0e-52 207.6 182 60.4
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 2.9e-50 202.2 154 59.1
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 3.2e-49 198.7 137 68.6
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 7.2e-49 197.6 153 60.1
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 1.4e-47 193.4 151 61.6
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.8e-47 193.0 154 59.1
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.6e-46 189.1 136 63.2
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 1.3e-45 186.8 151 60.9
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 1.3e-42 176.8 99 81.8
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 2.3e-39 166.0 164 51.8
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 6.8e-39 164.5 108 70.4
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 2.0e-38 162.9 106 70.8
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 3.4e-38 162.2 152 54.6
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 1.2e-35 153.7 90 77.8
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 5.9e-35 151.4 90 81.1
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 4.0e-31 138.7 78 83.3
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 8.9e-31 137.5 146 47.9
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 8.9e-31 137.5 81 77.8
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 8.9e-31 137.5 81 77.8
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.4e-28 130.2 80 71.2
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 3.5e-27 125.6 81 72.8
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 5.2e-23 111.7 78 64.1
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 7.5e-22 107.8 81 63.0
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.4e-20 102.8 70 68.6
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 2.5e-17 92.8 67 62.7
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 1.8e-15 86.7 97 46.4
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 3.7e-13 79.0 54 57.4
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 5.1e-10 68.6 129 33.3
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 6.6e-10 68.2 78 48.7
Os01g0610400 Oryza sativa ssp. japonica HOM05D004398 ORTHO05D005268 2.0e-06 56.6 128 29.7


User provided reference genes

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