Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 2.7e-86 322.0 171 100.0
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 5.5e-79 297.7 171 93.0
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 7.5e-68 260.8 179 81.0
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 1.3e-64 250.0 174 83.3
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 4.3e-63 245.0 173 79.8
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 4.3e-63 245.0 173 79.8
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 1.1e-61 240.4 174 77.0
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 1.4e-61 240.0 175 77.7
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.4e-61 240.0 176 78.4
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.4e-61 240.0 176 78.4
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 1.8e-61 239.6 176 78.4
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 3.1e-61 238.8 175 76.6
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 4.0e-61 238.4 176 76.7
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 5.2e-61 238.0 177 75.7
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 1.2e-60 236.9 177 75.7
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 2.0e-60 236.1 174 73.0
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 4.4e-60 235.0 172 73.8
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 9.8e-60 233.8 178 75.8
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 9.8e-60 233.8 172 72.7
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 4.9e-59 231.5 176 75.6
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 6.4e-59 231.1 177 71.8
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 8.3e-59 230.7 174 75.3
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 8.3e-59 230.7 171 73.7
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 1.1e-58 230.3 173 72.3
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 1.9e-58 229.6 174 75.3
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 4.1e-58 228.4 176 73.9
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 4.1e-58 228.4 176 71.6
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 4.1e-58 228.4 176 73.3
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 5.4e-58 228.0 172 73.8
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 7.1e-58 227.6 182 69.8
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 7.1e-58 227.6 172 73.3
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 1.2e-57 226.9 177 71.8
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 1.6e-57 226.5 182 69.2
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 2.1e-57 226.1 176 73.9
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 2.1e-57 226.1 173 72.8
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 2.1e-57 226.1 171 73.1
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 3.5e-57 225.3 173 74.0
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 4.6e-57 224.9 173 74.0
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 6.0e-57 224.6 176 73.9
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 6.0e-57 224.6 177 72.3
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 7.8e-57 224.2 174 73.0
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 7.8e-57 224.2 174 75.9
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 1.0e-56 223.8 174 74.1
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 1.3e-56 223.4 174 72.4
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 1.3e-56 223.4 175 72.0
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 2.3e-56 222.6 175 73.7
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 3.9e-56 221.9 180 68.3
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 3.9e-56 221.9 178 72.5
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 6.6e-56 221.1 173 74.0
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 1.1e-55 220.3 176 72.2
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 1.5e-55 219.9 180 70.0
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 2.5e-55 219.2 182 71.4
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 4.3e-55 218.4 176 74.4
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 4.3e-55 218.4 176 74.4
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 4.3e-55 218.4 185 69.2
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 5.6e-55 218.0 174 70.1
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 9.5e-55 217.2 169 73.4
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 8.1e-54 214.2 173 71.1
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 1.1e-53 213.8 181 70.2
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 1.1e-53 213.8 172 70.3
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 6.8e-53 211.1 173 71.1
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 2.0e-52 209.5 177 70.6
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 2.6e-52 209.1 171 70.8
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 3.4e-52 208.8 176 69.9
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 4.4e-52 208.4 175 68.6
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 9.9e-52 207.2 177 67.8
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.3e-51 206.8 187 67.4
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 1.7e-51 206.5 177 70.1
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 1.7e-51 206.5 187 67.4
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 8.3e-51 204.1 174 67.8
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 8.3e-51 204.1 178 68.5
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.9e-50 203.0 173 68.8
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 2.4e-50 202.6 173 68.8
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 2.4e-50 202.6 180 66.1
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 1.2e-49 200.3 184 69.0
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 2.1e-49 199.5 172 65.7
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 4.6e-49 198.4 175 65.1
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 6.0e-49 198.0 181 65.2
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 1.0e-48 197.2 166 71.7
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 1.0e-48 197.2 114 87.7
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 1.3e-48 196.8 180 65.6
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 1.7e-48 196.4 129 79.8
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 3.0e-48 195.7 179 65.4
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 3.9e-48 195.3 163 69.9
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 6.6e-48 194.5 132 76.5
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 8.6e-48 194.1 179 62.6
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 9.6e-47 190.7 129 80.6
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 1.2e-46 190.3 180 62.2
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 1.2e-46 190.3 180 62.2
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 1.2e-46 190.3 185 62.7
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 2.8e-46 189.1 116 84.5
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 6.2e-46 188.0 180 61.7
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 8.1e-46 187.6 180 61.7
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 1.1e-45 187.2 181 61.9
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 1.1e-45 187.2 181 60.8
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 1.1e-45 187.2 177 61.6
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 1.1e-45 187.2 175 62.9
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 1.4e-45 186.8 180 61.1
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 1.8e-45 186.4 168 61.3
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 2.4e-45 186.0 136 74.3
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 5.2e-45 184.9 166 62.7
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 6.8e-45 184.5 176 61.9
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 6.8e-45 184.5 179 61.5
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 8.9e-45 184.1 107 85.0
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 1.5e-44 183.3 103 90.3
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 1.5e-44 183.3 170 64.7
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 2.0e-44 183.0 132 76.5
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 2.6e-44 182.6 182 59.9
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 2.6e-44 182.6 182 59.9
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 5.8e-44 181.4 166 65.1
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 1.3e-43 180.3 173 61.3
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 1.3e-43 180.3 177 61.6
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 2.2e-43 179.5 179 59.8
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 4.2e-42 175.3 178 59.0
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.4e-37 160.2 138 68.8
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 5.3e-37 158.3 110 70.9
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 3.0e-32 142.5 85 81.2
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 3.0e-32 142.5 124 66.9
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 2.5e-31 139.4 145 57.9
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 2.1e-30 136.3 146 52.1
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 4.8e-30 135.2 133 54.9
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 4.8e-30 135.2 134 53.7
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 9.9e-28 127.5 115 58.3
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 1.2e-25 120.6 165 44.2
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 5.3e-21 105.1 105 47.6
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 1.5e-20 103.6 129 55.8
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 1.0e-19 100.9 159 41.5
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 2.7e-17 92.8 170 44.7
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 3.3e-07 59.3 100 30.0
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 4.3e-07 58.9 98 29.6
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 9.7e-07 57.8 103 31.1
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 1.6e-06 57.0 104 31.7
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 2.2e-06 56.6 101 30.7
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 2.2e-06 56.6 101 30.7
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 2.2e-06 56.6 104 30.8
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 2.2e-06 56.6 102 33.3
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 28.6
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 28.6
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 28.6
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 3.7e-06 55.8 101 30.7
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 3.7e-06 55.8 104 30.8
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 4.8e-06 55.5 101 30.7


User provided reference genes

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