Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 2.0e-128 462.6 266 100.0
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 3.7e-98 362.1 276 80.8
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 7.9e-56 221.5 304 55.9
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.4e-49 200.7 278 55.8
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 1.0e-26 124.8 288 41.3
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 7.4e-22 108.6 314 43.0
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 1.3e-21 107.8 275 41.1
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 2.4e-20 103.6 319 41.4
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.2e-19 101.3 336 36.6
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 1.7e-18 97.4 315 37.8
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 5.0e-18 95.9 340 37.4
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 4.2e-17 92.8 335 34.9
Potri.007G078350 Populus trichocarpa HOM05D010652 ORTHO05D003109 1.0e-15 88.2 199 42.7
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 1.8e-15 87.4 275 33.8
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 3.9e-15 86.3 289 36.3
Potri.005G086300 Populus trichocarpa HOM05D010652 ORTHO05D003109 3.9e-15 86.3 223 41.3
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 5.2e-15 85.9 330 34.2
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 6.7e-15 85.5 300 34.3
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 6.7e-15 85.5 322 32.6
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 8.8e-15 85.1 286 34.3
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 8.8e-15 85.1 286 34.3
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 2.0e-14 84.0 313 33.5
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 2.6e-14 83.6 308 32.8
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 3.3e-14 83.2 293 35.2
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 5.7e-14 82.4 325 36.0
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 5.7e-14 82.4 325 36.0
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 9.7e-14 81.6 299 34.8
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 9.7e-14 81.6 288 34.4
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.7e-13 80.9 279 38.4
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 3.7e-13 79.7 307 36.2
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 6.3e-13 79.0 318 32.4
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 6.3e-13 79.0 288 34.0
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 8.2e-13 78.6 278 36.3
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 1.1e-12 78.2 255 34.9
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 1.4e-12 77.8 234 35.5
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.8e-12 77.4 289 33.2
Prupe.3G233700 Prunus persica HOM05D010652 ORTHO05D003109 1.8e-12 77.4 361 34.3
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 2.4e-12 77.0 332 31.9
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 2.4e-12 77.0 293 34.1
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 3.1e-12 76.6 311 32.5
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 4.1e-12 76.3 327 31.2
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 5.3e-12 75.9 304 31.9
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 9.1e-12 75.1 314 33.8
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 9.1e-12 75.1 286 32.9
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 9.1e-12 75.1 281 34.9
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.6e-11 74.3 290 32.4
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 2.0e-11 73.9 321 36.1
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.0e-11 73.9 298 31.2
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.6e-11 73.6 296 35.1
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.5e-11 73.2 296 35.1
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 4.5e-11 72.8 306 34.3
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 7.7e-11 72.0 269 34.6
FAN02G3640 Fragaria x ananassa HOM05D002331 ORTHO05D002624 1.0e-10 71.6 243 35.8
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.3e-10 71.2 309 30.4
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.3e-10 71.2 321 30.5
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 2.2e-10 70.5 289 32.9
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.2e-10 70.5 282 34.0
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.8e-10 69.7 300 34.0
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 3.8e-10 69.7 300 33.7
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 3.8e-10 69.7 300 33.7
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 5.0e-10 69.3 248 35.5
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 6.5e-10 68.9 320 32.2
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 6.5e-10 68.9 273 29.7
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 8.5e-10 68.6 266 39.5
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 8.5e-10 68.6 281 34.5
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 1.1e-09 68.2 296 32.1
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.5e-09 67.8 280 33.6
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.5e-09 67.8 295 31.2
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.9e-09 67.4 309 32.0
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 1.9e-09 67.4 299 32.4
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.9e-09 67.4 307 31.3
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.9e-09 67.4 349 28.9
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 2.5e-09 67.0 302 32.1
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 2.5e-09 67.0 316 29.7
Atru.chr6.3042 Acer truncatum HOM05D010652 ORTHO05D003109 3.2e-09 66.6 97 53.6
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 3.2e-09 66.6 262 39.7
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.2e-09 66.6 309 32.4
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 5.5e-09 65.9 290 31.0
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.2e-09 65.5 315 33.7
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 7.2e-09 65.5 310 32.3
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 9.4e-09 65.1 292 29.1
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.6e-08 64.3 339 31.9
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 2.7e-08 63.5 289 35.6
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 2.7e-08 63.5 283 32.2
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 4.7e-08 62.8 288 33.0
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 4.7e-08 62.8 279 30.5
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 4.7e-08 62.8 276 32.6
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 6.1e-08 62.4 324 34.3
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 6.1e-08 62.4 337 30.3
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 8.0e-08 62.0 283 32.2
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 8.0e-08 62.0 329 35.0
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 8.0e-08 62.0 347 34.0
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 8.0e-08 62.0 285 32.3
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.0e-07 61.6 315 32.7
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 1.0e-07 61.6 301 34.9
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 1.4e-07 61.2 244 32.4
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 1.4e-07 61.2 293 30.0
Eucgr.K00944 Eucalyptus grandis HOM05D010652 ORTHO05D003109 1.4e-07 61.2 304 36.5
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.4e-07 61.2 318 34.0
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.4e-07 61.2 314 34.4
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 1.8e-07 60.8 300 35.0
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.8e-07 60.8 248 28.2
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.3e-07 60.5 274 30.3
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.3e-07 60.5 274 30.3
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 2.3e-07 60.5 296 32.1
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 2.3e-07 60.5 289 32.9
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.0e-07 60.1 285 31.2
Thecc.02G174400 Theobroma cacao HOM05D053928 ORTHO05D003109 3.0e-07 60.1 245 37.1
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 4.0e-07 59.7 297 31.6
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 5.2e-07 59.3 314 29.3
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 5.2e-07 59.3 248 29.0
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 6.7e-07 58.9 304 29.9
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 6.7e-07 58.9 310 31.9
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 6.7e-07 58.9 349 29.5
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 6.7e-07 58.9 316 28.5
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.2e-06 58.2 277 33.2
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.0e-06 57.4 311 32.5
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 2.0e-06 57.4 253 32.0
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 2.6e-06 57.0 299 30.1
RcHm_v2.0_Chr2g0162231 Rosa chinensis HOM05D010652 ORTHO05D003109 2.6e-06 57.0 112 41.1
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 3.3e-06 56.6 299 29.1
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 3.3e-06 56.6 299 29.1
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 5.7e-06 55.8 282 29.1
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 5.7e-06 55.8 302 30.1
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 5.7e-06 55.8 247 31.6
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 5.7e-06 55.8 319 30.7
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 5.7e-06 55.8 338 28.7


User provided reference genes

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