Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014546 Carpinus fangiana HOM05D006917 ORTHO05D008297 3.2e-190 668.3 347 100.0
Haze_13090 Corylus avellana HOM05D006917 ORTHO05D008297 2.2e-183 645.6 347 96.8
CiPaw.03G170000 Carya illinoinensis HOM05D006917 ORTHO05D008297 7.4e-155 550.8 347 82.1
QL08p037351 Quercus lobata HOM05D006917 ORTHO05D008297 2.5e-147 525.8 351 78.6
MD09G1093800 Malus domestica HOM05D006917 ORTHO05D008297 1.8e-137 493.0 349 73.1
Prupe.3G231600 Prunus persica HOM05D006917 ORTHO05D008297 1.8e-132 476.5 349 72.2
RcHm_v2.0_Chr2g0161911 Rosa chinensis HOM05D006917 ORTHO05D008297 6.3e-130 468.0 349 71.9
Atru.chr6.3069 Acer truncatum HOM05D006917 ORTHO05D008297 1.4e-124 450.3 359 67.1
CANSAT64G1157 Cannabis sativa HOM05D006917 ORTHO05D008297 3.0e-124 449.1 348 69.5
FvH4_6g44760 Fragaria vesca HOM05D006917 ORTHO05D008297 2.6e-123 446.0 349 68.8
FAN14G5902 Fragaria x ananassa HOM05D006917 ORTHO05D008297 5.7e-123 444.9 349 68.8
FAN09G3443 Fragaria x ananassa HOM05D006917 ORTHO05D008297 3.7e-122 442.2 349 68.5
Duzib132G0607 Durio zibethinus HOM05D006917 ORTHO05D008297 6.3e-122 441.4 346 68.2
FAN02G4118 Fragaria x ananassa HOM05D006917 ORTHO05D008297 8.2e-122 441.0 349 68.2
Manes.13G151300 Manihot esculenta HOM05D006917 ORTHO05D008297 3.1e-121 439.1 353 66.6
Gorai.013G073800 Gossypium raimondii HOM05D006917 ORTHO05D008297 4.1e-121 438.7 355 66.8
Gohir.A13G056900 Gossypium hirsutum HOM05D006917 ORTHO05D008297 2.0e-120 436.4 356 66.9
Dinv15489 Davidia involucrata HOM05D006917 ORTHO05D008297 1.7e-119 433.3 360 66.9
COL.COLO4_13687 Corchorus olitorius HOM05D006917 ORTHO05D008297 2.2e-119 433.0 355 66.5
Thecc.02G172300 Theobroma cacao HOM05D006917 ORTHO05D008297 5.5e-118 428.3 355 66.5
Cpa.g.sc53.106 Carica papaya HOM05D006917 ORTHO05D008297 7.2e-118 427.9 360 65.8
FAN05G2664 Fragaria x ananassa HOM05D006917 ORTHO05D008297 6.1e-117 424.9 349 67.9
Ciclev10015637m.g Citrus clementina HOM05D006917 ORTHO05D008297 1.4e-116 423.7 361 65.1
TWI36G0541 Tripterygium wilfordii HOM05D006917 ORTHO05D008297 1.8e-116 423.3 352 64.2
Hma1.2p1_0565F.1_g179500 Hydrangea macrophylla HOM05D006917 ORTHO05D008297 3.4e-115 419.1 359 62.7
Eucgr.D00334 Eucalyptus grandis HOM05D006917 ORTHO05D008297 1.3e-114 417.2 268 79.1
Potri.013G146900 Populus trichocarpa HOM05D006917 ORTHO05D008297 1.6e-112 410.2 354 65.0
ClCG01G000980 Citrullus lanatus HOM05D006917 ORTHO05D008297 2.9e-111 406.0 354 61.6
Sed0009072 Sechium edule HOM05D006917 ORTHO05D008297 9.4e-110 401.0 346 63.6
THA.LOC104825523 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 1.0e-108 397.5 317 66.6
GSVIVG01030015001 Vitis vinifera HOM05D006917 ORTHO05D008297 3.0e-108 396.0 256 77.7
CSS0047204 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 5.2e-108 395.2 361 61.2
Sabra13G0118400 Salix brachista HOM05D006917 ORTHO05D008297 1.2e-107 394.0 360 62.8
Gohir.D13G065000 Gossypium hirsutum HOM05D006917 ORTHO05D008297 4.4e-107 392.1 256 76.2
PGR042G0968 Punica granatum HOM05D006917 ORTHO05D008297 5.7e-107 391.7 364 60.2
CSS0012077 Camellia sinensis var. sinensis HOM05D006917 ORTHO05D008297 2.2e-106 389.8 361 60.9
Lj3g0010136 Lotus japonicus HOM05D006917 ORTHO05D008297 8.3e-106 387.9 349 60.5
MELO3C005833.2 Cucumis melo HOM05D006917 ORTHO05D008297 1.6e-104 383.6 342 60.8
THA.LOC104807893 Tarenaya hassleriana HOM05D006917 ORTHO05D008297 7.7e-104 381.3 325 62.8
Carub.0007s1255 Capsella rubella HOM05D006917 ORTHO05D008297 1.9e-102 376.7 277 70.8
VMungo1127G0570 Vigna mungo HOM05D006917 ORTHO05D008297 2.5e-102 376.3 313 62.6
AL7G24390 Arabidopsis lyrata HOM05D006917 ORTHO05D008297 4.2e-102 375.6 286 69.6
BolC7t46080H Brassica oleracea HOM05D006917 ORTHO05D008297 4.2e-102 375.6 274 70.4
AT4G28210 Arabidopsis thaliana HOM05D006917 ORTHO05D008297 2.1e-101 373.2 286 68.9
Phvul.011G111800 Phaseolus vulgaris HOM05D006917 ORTHO05D008297 3.6e-101 372.5 323 61.0
Sp7g26170 Schrenkiella parvula HOM05D006917 ORTHO05D008297 1.0e-100 370.9 272 70.2
A03p57910 Brassica napus HOM05D006917 ORTHO05D008297 2.3e-100 369.8 272 70.2
CsaV3_5G001130 Cucumis sativus L. HOM05D006917 ORTHO05D008297 3.0e-100 369.4 357 58.8
BraA03t14855Z Brassica rapa HOM05D006917 ORTHO05D008297 5.2e-100 368.6 272 70.2
Lalb_Chr03g0029201 Lupinus albus HOM05D006917 ORTHO05D008297 2.0e-99 366.7 341 60.1
PGSC0003DMG401021671 Solanum tuberosum HOM05D006917 ORTHO05D008297 2.0e-99 366.7 357 58.0
Aa31LG2G22070 Aethionema arabicum HOM05D006917 ORTHO05D008297 2.6e-99 366.3 318 62.3
Lalb_Chr19g0135451 Lupinus albus HOM05D006917 ORTHO05D008297 2.6e-99 366.3 352 59.1
CARHR235920 Cardamine hirsuta HOM05D006917 ORTHO05D008297 4.4e-99 365.5 286 66.1
Thhalv10025608m.g Eutrema salsugineum HOM05D006917 ORTHO05D008297 7.5e-99 364.8 338 60.4
Nn1g03886 Nelumbo nucifera HOM05D006917 ORTHO05D008297 9.8e-99 364.4 358 57.8
C07p56030 Brassica napus HOM05D006917 ORTHO05D008297 1.3e-98 364.0 272 69.5
A01p19630 Brassica napus HOM05D006917 ORTHO05D008297 1.7e-98 363.6 323 61.0
Peaxi162Scf00608g00317 Petunia axillaris HOM05D006917 ORTHO05D008297 2.8e-98 362.8 356 57.3
Solyc10g008600.3 Solanum lycopersicum HOM05D006917 ORTHO05D008297 4.9e-98 362.1 327 59.0
Cc05_g06310 Coffea canephora HOM05D006917 ORTHO05D008297 2.4e-97 359.8 256 72.3
Sopen10g004420 Solanum pennellii HOM05D006917 ORTHO05D008297 2.4e-97 359.8 360 56.7
BcaNung01588 Brassica carinata HOM05D006917 ORTHO05D008297 3.2e-97 359.4 268 67.5
Ah.04g154320 Amaranthus hybridus HOM05D006917 ORTHO05D008297 1.3e-95 354.0 311 58.8
arahy.Tifrunner.gnm1.ann1.RY5XZD Arachis hypogaea HOM05D006917 ORTHO05D008297 1.3e-95 354.0 278 64.4
EL10Ac9g22343 Beta vulgaris HOM05D006917 ORTHO05D008297 1.7e-95 353.6 348 56.6
Ca_20697_v3 Cicer arietinum L. HOM05D006917 ORTHO05D008297 2.9e-95 352.8 348 55.7
arahy.Tifrunner.gnm1.ann1.43ZBCD Arachis hypogaea HOM05D006917 ORTHO05D008297 5.0e-95 352.1 278 64.0
BraA01t01896Z Brassica rapa HOM05D006917 ORTHO05D008297 8.6e-95 351.3 274 66.8
AUR62044684 Chenopodium quinoa HOM05D006917 ORTHO05D008297 3.3e-94 349.4 359 53.2
Glyma.12G107100 Glycine max HOM05D006917 ORTHO05D008297 4.3e-94 349.0 346 57.2
Glyma.06G298100 Glycine max HOM05D006917 ORTHO05D008297 5.6e-94 348.6 264 66.7
PSO832G2257 Papaver somniferum HOM05D006917 ORTHO05D008297 1.2e-93 347.4 342 57.0
HanXRQChr06g0170991 Helianthus annuus HOM05D006917 ORTHO05D008297 3.6e-93 345.9 354 55.9
Psat7g195960 Pisum sativum HOM05D006917 ORTHO05D008297 8.0e-93 344.7 350 54.9
AUR62037382 Chenopodium quinoa HOM05D006917 ORTHO05D008297 1.0e-92 344.4 329 56.8
DCAR_009726 Daucus carota HOM05D006917 ORTHO05D008297 2.3e-92 343.2 355 58.0
Medtr4g046023 Medicago truncatula HOM05D006917 ORTHO05D008297 1.5e-91 340.5 324 57.1
PSO210G6334 Papaver somniferum HOM05D006917 ORTHO05D008297 2.6e-91 339.7 365 54.2
Actinidia30487 Actinidia chinensis HOM05D006917 ORTHO05D008297 5.8e-91 338.6 373 52.0
MBI19_g29221_MAGBIO Magnolia biondii HOM05D006917 ORTHO05D008297 7.5e-91 338.2 263 66.5
Aqoxy3G03605 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 1.7e-90 337.0 342 54.4
Migut.M00331 Erythranthe guttata HOM05D006917 ORTHO05D008297 2.2e-90 336.7 310 57.4
TPR.G21667 Trifolium pratense HOM05D006917 ORTHO05D008297 4.9e-90 335.5 350 54.6
BcaC06g32638 Brassica carinata HOM05D006917 ORTHO05D008297 6.4e-90 335.1 272 66.2
Lsat_1_v5_gn_3_39800 Lactuca sativa HOM05D006917 ORTHO05D008297 6.4e-90 335.1 351 53.3
MSTRG.18638 Avicennia marina HOM05D006917 ORTHO05D008297 1.1e-89 334.3 353 55.5
SalBow7G0082 Salvia bowleyana HOM05D006917 ORTHO05D008297 1.9e-89 333.6 398 50.0
unitig_746.g26713 Utricularia gibba HOM05D006917 ORTHO05D008297 1.6e-88 330.5 284 61.3
ECA246G1823 Erigeron canadensis HOM05D006917 ORTHO05D008297 6.0e-88 328.6 266 62.8
HPP92_002192 Vanilla planifolia HOM05D006917 ORTHO05D008297 1.7e-87 327.0 346 53.5
SGA_v2.0_scaffold70G23465 Striga asiatica HOM05D006917 ORTHO05D008297 2.3e-87 326.6 353 51.6
Sc21g0002460 Simmondsia chinensis HOM05D006917 ORTHO05D008297 8.6e-87 324.7 349 52.7
C01p24650 Brassica napus HOM05D006917 ORTHO05D008297 1.1e-86 324.3 253 67.2
BcaC09g50505 Brassica carinata HOM05D006917 ORTHO05D008297 1.9e-86 323.6 270 63.0
Hund08056 Selenicereus undatus HOM05D006917 ORTHO05D008297 8.0e-85 318.2 348 51.4
Lj8P117T42 Lonicera japonica HOM05D006917 ORTHO05D008297 1.1e-81 307.8 235 68.1
TAR629G2913 Trochodendron aralioides HOM05D006917 ORTHO05D008297 1.4e-81 307.4 291 60.5
Nitab4.5_0000635g0150 Nicotiana tabacum HOM05D006917 ORTHO05D008297 3.5e-80 302.8 353 52.1
Nitab4.5_0003195g0010 Nicotiana tabacum HOM05D006917 ORTHO05D008297 2.5e-78 296.6 232 66.8
BolC1t02415H Brassica oleracea HOM05D006917 ORTHO05D008297 7.3e-78 295.0 253 62.8
CDE12G0159 Ceratophyllum demersum HOM05D006917 ORTHO05D008297 2.1e-77 293.5 275 55.6
PGSC0003DMG400029584 Solanum tuberosum HOM05D006917 ORTHO05D008297 2.9e-74 283.1 206 68.4
MD17G1083500 Malus domestica HOM05D006917 ORTHO05D008297 1.4e-73 280.8 218 69.3
ATR0693G234 Amborella trichopoda HOM05D006917 ORTHO05D008297 2.4e-57 226.9 230 54.3
arahy.Tifrunner.gnm1.ann1.C6FW5S Arachis hypogaea HOM05D006917 ORTHO05D008297 4.2e-49 199.5 162 64.2
arahy.Tifrunner.gnm1.ann1.29DNDL Arachis hypogaea HOM05D006917 ORTHO05D008297 8.7e-39 165.2 136 62.5
SEGI_04255 Sequoiadendron giganteum HOM05D006917 ORTHO05D008297 3.3e-30 136.7 290 35.9
MD17G1083600 Malus domestica HOM05D006917 ORTHO05D008297 1.0e-23 115.2 76 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5823 Anthoceros agrestis HOM05D006917 ORTHO05D008297 1.4e-20 104.8 287 29.6
SEGI_37556 Sequoiadendron giganteum HOM05D006917 ORTHO05D008297 1.5e-19 101.3 199 39.7
Aqoxy3G03603 Aquilegia oxysepala HOM05D006917 ORTHO05D008297 1.9e-09 67.8 93 49.5
Cpa.g.sc609.4 Carica papaya HOM05D006917 ORTHO05D008297 1.9e-09 67.8 85 45.9
Oeu039864.1 Olea europaea HOM05D006917 ORTHO05D008297 6.1e-08 62.8 127 36.2
SMO300G0012 Selaginella moellendorffii HOM05D006917 ORTHO05D008297 1.1e-06 58.5 273 26.7
Rhsim04G0063600 Rhododendron simsii HOM05D000001 ORTHO05D009825 5.7e-06 56.2 68 47.1


User provided reference genes

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