Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 6.7e-136 488.0 246 100.0
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 2.6e-124 449.5 244 92.6
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 5.5e-98 362.1 242 77.3
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.8e-85 320.5 247 70.4
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 2.5e-66 256.9 207 66.2
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 5.2e-64 249.2 205 63.4
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 8.3e-62 241.9 210 64.3
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.1e-61 241.5 202 66.3
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.1e-61 241.5 202 66.3
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 4.6e-60 236.1 202 64.4
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 2.3e-59 233.8 216 59.3
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 3.6e-57 226.5 204 57.8
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 1.1e-56 224.9 205 58.0
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 6.4e-54 215.7 205 59.0
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 5.4e-53 212.6 205 54.1
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 9.2e-53 211.8 204 57.4
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 1.3e-51 208.0 189 59.3
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 1.3e-51 208.0 210 52.9
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 2.3e-51 207.2 201 57.2
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.4e-48 198.0 238 48.3
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 1.4e-48 198.0 174 62.1
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 6.8e-48 195.7 207 54.1
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.5e-47 194.5 190 54.7
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 2.6e-47 193.7 198 55.1
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 7.5e-47 192.2 243 45.3
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 9.9e-47 191.8 198 56.1
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 2.2e-46 190.7 204 52.5
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 2.2e-46 190.7 216 51.9
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 4.9e-46 189.5 217 50.7
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 9.2e-45 185.3 188 53.2
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.2e-44 184.9 188 52.7
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 7.8e-44 182.2 175 53.7
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 7.8e-44 182.2 199 50.3
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 2.5e-42 177.2 190 50.0
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 7.3e-42 175.6 204 50.5
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 9.5e-42 175.3 157 57.3
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 6.2e-41 172.6 222 45.9
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 6.2e-41 172.6 186 52.7
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 5.2e-40 169.5 174 54.0
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 8.9e-40 168.7 247 42.1
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 1.2e-39 168.3 191 48.2
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.3e-38 164.9 237 40.5
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 1.7e-38 164.5 179 51.4
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 1.7e-38 164.5 209 44.0
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 4.9e-38 162.9 204 42.6
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 4.9e-38 162.9 209 43.5
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 8.4e-38 162.2 178 47.8
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 1.1e-37 161.8 174 51.7
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 1.2e-36 158.3 207 44.0
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 2.1e-36 157.5 190 48.9
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 7.8e-36 155.6 203 46.8
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 3.9e-35 153.3 206 45.6
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 5.1e-35 152.9 187 48.7
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 1.5e-34 151.4 176 48.3
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 1.6e-33 147.9 173 49.1
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 2.1e-33 147.5 148 56.1
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 2.8e-33 147.1 217 40.1
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 1.1e-32 145.2 138 57.2
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 5.2e-32 142.9 184 42.4
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 5.2e-32 142.9 174 45.4
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 6.9e-32 142.5 175 45.1
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.5e-31 141.4 202 43.1
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 2.6e-31 140.6 190 41.6
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 2.6e-31 140.6 178 47.2
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 4.9e-30 136.3 177 46.3
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 3.2e-29 133.7 176 40.3
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 9.3e-29 132.1 173 40.5
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 4.6e-28 129.8 176 43.8
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 7.8e-28 129.0 176 43.8
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 1.9e-26 124.4 208 39.9
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 5.6e-26 122.9 200 41.5
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 7.3e-26 122.5 176 41.5
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 8.1e-25 119.0 190 40.0
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 5.3e-24 116.3 133 46.6
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 9.9e-23 112.1 176 43.2
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 4.9e-22 109.8 186 39.2
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 4.9e-22 109.8 170 43.5
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 6.4e-22 109.4 130 47.7
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 8.4e-22 109.0 163 43.6
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 1.4e-21 108.2 169 41.4
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 5.4e-21 106.3 160 44.4
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 7.1e-21 105.9 141 46.1
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 7.1e-21 105.9 141 46.1
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 9.3e-21 105.5 141 45.4
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 1.6e-20 104.8 173 36.4
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 2.7e-20 104.0 98 56.1
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 2.3e-19 100.9 170 41.8
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 3.9e-19 100.1 163 41.7
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 5.1e-19 99.8 143 44.1
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.9e-18 97.8 160 39.4
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 4.3e-18 96.7 160 38.8
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 4.3e-18 96.7 184 35.3
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 5.6e-18 96.3 159 39.0
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 1.3e-17 95.1 160 38.8
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.3e-17 95.1 160 38.8
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 2.8e-17 94.0 169 39.6
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 1.1e-16 92.0 134 41.8
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 6.4e-14 82.8 154 37.0
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 6.4e-14 82.8 156 34.6
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 1.8e-11 74.7 128 34.4
MD14G1065400 Malus domestica HOM05D007281 ORTHO05D009241 4.9e-06 56.6 44 61.4


User provided reference genes

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