Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014402 Carpinus fangiana HOM05D008160 ORTHO05D009635 4.8e-69 264.6 158 100.0
Haze_12867 Corylus avellana HOM05D008160 ORTHO05D009635 2.2e-45 186.0 166 75.9
QL06p012138 Quercus lobata HOM05D008160 ORTHO05D009635 1.1e-25 120.6 158 51.3
QL08p033125 Quercus lobata HOM05D008160 ORTHO05D009635 1.1e-25 120.6 158 51.3
CiPaw.03G160200 Carya illinoinensis HOM05D008160 ORTHO05D009635 4.7e-24 115.2 157 50.3
CiPaw.04G116300 Carya illinoinensis HOM05D008160 ORTHO05D009635 3.4e-22 109.0 155 49.0
Dinv05432 Davidia involucrata HOM05D008160 ORTHO05D009635 1.1e-20 104.0 146 50.0
TWI75G1754 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 2.0e-19 99.8 96 58.3
TWI36G0727 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 4.6e-19 98.6 93 58.1
Thecc.02G314100 Theobroma cacao HOM05D008160 ORTHO05D009635 1.3e-18 97.1 157 42.7
Gohir.D02G133900 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.7e-18 96.7 94 59.6
Gorai.005G149800 Gossypium raimondii HOM05D008160 ORTHO05D009635 1.7e-18 96.7 94 59.6
Gohir.A03G108800 Gossypium hirsutum HOM05D008160 ORTHO05D009635 8.6e-18 94.4 94 57.4
FvH4_6g43200 Fragaria vesca HOM05D008160 ORTHO05D009635 3.3e-17 92.4 165 41.8
FAN02G3260 Fragaria x ananassa HOM05D008160 ORTHO05D009635 5.6e-17 91.7 165 41.2
Hma1.2p1_0328F.1_g126920 Hydrangea macrophylla HOM05D008160 ORTHO05D009635 1.2e-16 90.5 73 65.8
FAN09G3148 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.6e-16 90.1 165 40.6
FAN10G1253 Fragaria x ananassa HOM05D008160 ORTHO05D009635 4.7e-16 88.6 165 44.2
FAN14G2424 Fragaria x ananassa HOM05D008160 ORTHO05D009635 4.7e-16 88.6 165 44.2
TAR626G0785 Trochodendron aralioides HOM05D008160 ORTHO05D009635 1.1e-15 87.4 158 40.5
COL.COLO4_27706 Corchorus olitorius HOM05D008160 ORTHO05D009635 1.2e-14 84.0 159 39.6
Prupe.3G217400 Prunus persica HOM05D008160 ORTHO05D009635 1.2e-14 84.0 92 48.9
TAR624G1256 Trochodendron aralioides HOM05D008160 ORTHO05D009635 1.5e-14 83.6 156 41.0
RcHm_v2.0_Chr2g0159311 Rosa chinensis HOM05D008160 ORTHO05D009635 1.3e-13 80.5 164 37.8
RcHm_v2.0_Chr2g0159421 Rosa chinensis HOM05D008160 ORTHO05D009635 1.3e-13 80.5 162 38.9
MD09G1108700 Malus domestica HOM05D008160 ORTHO05D009635 3.7e-13 79.0 161 39.8
TPR.G4649 Trifolium pratense HOM05D008160 ORTHO05D009635 3.7e-13 79.0 156 37.2
Lj3g0006762 Lotus japonicus HOM05D008160 ORTHO05D009635 4.9e-13 78.6 159 40.3
Glyma.06G305400 Glycine max HOM05D008160 ORTHO05D009635 1.4e-12 77.0 93 48.4
Glyma.13G308600 Glycine max HOM05D008160 ORTHO05D009635 5.4e-12 75.1 94 54.3
Ca_01599_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 1.2e-11 73.9 95 50.5
Potri.002G229300 Populus trichocarpa HOM05D008160 ORTHO05D009635 1.2e-11 73.9 97 44.3
TPR.G4242 Trifolium pratense HOM05D008160 ORTHO05D009635 2.1e-11 73.2 106 43.4
CsaV3_2G034970 Cucumis sativus L. HOM05D008160 ORTHO05D009635 2.7e-11 72.8 92 44.6
Psat7g157360 Pisum sativum HOM05D008160 ORTHO05D009635 3.5e-11 72.4 107 41.1
Sabra02G0175400 Salix brachista HOM05D008160 ORTHO05D009635 3.5e-11 72.4 162 32.7
CANSAT64G2131 Cannabis sativa HOM05D008160 ORTHO05D009635 4.6e-11 72.0 105 46.7
Potri.014G153200 Populus trichocarpa HOM05D008160 ORTHO05D009635 4.6e-11 72.0 163 35.6
Glyma.12G193900 Glycine max HOM05D008160 ORTHO05D009635 6.0e-11 71.6 84 56.0
Phvul.011G104000 Phaseolus vulgaris HOM05D008160 ORTHO05D009635 6.0e-11 71.6 93 46.2
Glyma.12G099100 Glycine max HOM05D008160 ORTHO05D009635 1.3e-10 70.5 92 51.1
Ciclev10017235m.g Citrus clementina HOM05D008160 ORTHO05D009635 1.7e-10 70.1 73 60.3
Nn1g03539 Nelumbo nucifera HOM05D008160 ORTHO05D009635 1.7e-10 70.1 88 50.0
Manes.12G074700 Manihot esculenta HOM05D008160 ORTHO05D009635 3.9e-10 68.9 94 45.7
LjContig00412g0003580 Lotus japonicus HOM05D008160 ORTHO05D009635 1.1e-09 67.4 94 47.9
Lalb_Chr19g0135851 Lupinus albus HOM05D008160 ORTHO05D009635 1.1e-09 67.4 95 47.4
PGR042G1178 Punica granatum HOM05D008160 ORTHO05D009635 1.5e-09 67.0 91 48.4
Gorai.013G101200 Gossypium raimondii HOM05D008160 ORTHO05D009635 3.3e-09 65.9 157 35.7
ClCG02G008690 Citrullus lanatus HOM05D008160 ORTHO05D009635 4.3e-09 65.5 93 40.9
MELO3C019266.2 Cucumis melo HOM05D008160 ORTHO05D009635 4.3e-09 65.5 92 41.3
Gohir.D13G088500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 4.3e-09 65.5 94 45.7
Lalb_Chr03g0028751 Lupinus albus HOM05D008160 ORTHO05D009635 5.6e-09 65.1 139 37.4
VMungo1127G0429 Vigna mungo HOM05D008160 ORTHO05D009635 9.5e-09 64.3 76 44.7
arahy.Tifrunner.gnm1.ann1.MX58RG Arachis hypogaea HOM05D008160 ORTHO05D009635 1.6e-08 63.5 72 50.0
Gohir.A13G094500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.6e-08 63.5 76 52.6
Eucgr.A01130 Eucalyptus grandis HOM05D008160 ORTHO05D009635 3.6e-08 62.4 106 46.2
Ca_26933_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 4.7e-08 62.0 156 33.3
Rhsim04G0053300 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.2e-08 61.6 71 53.5
ATR0661G403 Amborella trichopoda HOM05D008160 ORTHO05D009635 1.4e-07 60.5 92 40.2
A01p33300 Brassica napus HOM05D010757 ORTHO05D009635 3.1e-07 59.3 88 42.0
AT3G21680 Arabidopsis thaliana HOM05D010757 ORTHO05D009635 4.0e-07 58.9 82 45.1
C01p42560 Brassica napus HOM05D010757 ORTHO05D009635 4.0e-07 58.9 88 42.0
BolC1t04209H Brassica oleracea HOM05D010757 ORTHO05D009635 4.0e-07 58.9 88 42.0
BraA01t03447Z Brassica rapa HOM05D010757 ORTHO05D009635 4.0e-07 58.9 88 42.0
BraA01t03448Z Brassica rapa HOM05D010757 ORTHO05D009635 4.0e-07 58.9 88 42.0
Cpa.g.sc8.214 Carica papaya HOM05D008160 ORTHO05D009635 4.0e-07 58.9 164 31.7
AL3G35800 Arabidopsis lyrata HOM05D010757 ORTHO05D009635 6.8e-07 58.2 83 43.4
Thhalv10026860m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 8.9e-07 57.8 83 43.4
CARHR097620 Cardamine hirsuta HOM05D010757 ORTHO05D009635 1.2e-06 57.4 85 44.7
Nn5g29373 Nelumbo nucifera HOM05D008160 ORTHO05D009635 1.2e-06 57.4 84 39.3
Sp7g13570 Schrenkiella parvula HOM05D010757 ORTHO05D009635 1.2e-06 57.4 74 48.6
Atru.chr6.3179 Acer truncatum HOM05D008160 ORTHO05D009635 1.5e-06 57.0 83 44.6
Medtr4g048060 Medicago truncatula HOM05D008160 ORTHO05D009635 1.5e-06 57.0 158 35.4
Thecc.02G314300 Theobroma cacao HOM05D008160 ORTHO05D009635 1.5e-06 57.0 157 35.0
Aqoxy1G02168 Aquilegia oxysepala HOM05D034144 ORTHO05D009635 2.0e-06 56.6 96 38.5
BcaB04g20576 Brassica carinata HOM05D010757 ORTHO05D009635 2.0e-06 56.6 82 42.7
Sp3g19690 Schrenkiella parvula HOM05D010757 ORTHO05D009635 2.0e-06 56.6 70 47.1
ATR0752G071 Amborella trichopoda HOM05D008160 ORTHO05D009635 3.4e-06 55.8 97 41.2
Carub.0003s2173 Capsella rubella HOM05D010757 ORTHO05D009635 4.4e-06 55.5 106 37.7
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 5.8e-06 55.1 76 38.2
Medtr2g088370 Medicago truncatula HOM05D008160 ORTHO05D009635 5.8e-06 55.1 95 38.9
Thhalv10022045m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 9.9e-06 54.3 79 44.3


User provided reference genes

Program Settings