Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014387 Carpinus fangiana HOM05D002437 ORTHO05D043733 9.6e-98 360.1 180 100.0
Haze_12850 Corylus avellana HOM05D002437 ORTHO05D043733 2.2e-62 242.7 145 86.2
Haze_12851 Corylus avellana HOM05D002437 ORTHO05D164070 4.0e-43 178.7 100 90.0
PGSC0003DMG400019872 Solanum tuberosum HOM05D002437 ORTHO05D002831 1.6e-12 77.0 91 56.0
Actinidia26905 Actinidia chinensis HOM05D002437 ORTHO05D002831 2.1e-12 76.6 116 47.4
Solyc02g032860.3 Solanum lycopersicum HOM05D002437 ORTHO05D002831 2.1e-12 76.6 91 56.0
Sopen02g011260 Solanum pennellii HOM05D002437 ORTHO05D002831 2.8e-12 76.3 91 56.0
Actinidia05508 Actinidia chinensis HOM05D002437 ORTHO05D002831 4.7e-12 75.5 115 47.8
TAR622G1392 Trochodendron aralioides HOM05D002437 ORTHO05D002831 4.7e-12 75.5 116 50.0
TAR626G1698 Trochodendron aralioides HOM05D002437 ORTHO05D002831 4.7e-12 75.5 91 56.0
Cfa020324 Carpinus fangiana HOM05D002437 ORTHO05D002831 6.2e-12 75.1 103 51.5
Potri.004G012100 Populus trichocarpa HOM05D002437 ORTHO05D002831 6.2e-12 75.1 91 50.5
Ca_00668_v3 Cicer arietinum L. HOM05D002437 ORTHO05D002831 8.0e-12 74.7 118 47.5
Sabra04G0005600 Salix brachista HOM05D002437 ORTHO05D002831 8.0e-12 74.7 91 50.5
GSVIVG01030440001 Vitis vinifera HOM05D002437 ORTHO05D002831 1.1e-11 74.3 104 45.2
Dinv13902 Davidia involucrata HOM05D002437 ORTHO05D002831 1.4e-11 73.9 111 48.6
SalBow1G5792 Salvia bowleyana HOM05D002437 ORTHO05D002831 1.4e-11 73.9 91 51.6
Cpa.g.sc152.28 Carica papaya HOM05D002437 ORTHO05D002831 1.8e-11 73.6 91 53.8
CSS0028007 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 3.1e-11 72.8 91 48.4
CANSAT56G2408 Cannabis sativa HOM05D002437 ORTHO05D002831 3.1e-11 72.8 91 53.8
CAN.G39.4 Capsicum annuum HOM05D002437 ORTHO05D002831 3.1e-11 72.8 91 51.6
ECA234G2099 Erigeron canadensis HOM05D002437 ORTHO05D002831 3.1e-11 72.8 116 48.3
Lsat_1_v5_gn_4_59381 Lactuca sativa HOM05D002437 ORTHO05D002831 3.1e-11 72.8 91 53.8
MSTRG.7201 Avicennia marina HOM05D002437 ORTHO05D002831 4.0e-11 72.4 122 44.3
CSS0009987 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 4.0e-11 72.4 91 53.8
CSS0030143 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 4.0e-11 72.4 91 53.8
ClCG01G021900 Citrullus lanatus HOM05D002437 ORTHO05D002831 4.0e-11 72.4 91 53.8
Nitab4.5_0004810g0010 Nicotiana tabacum HOM05D002437 ORTHO05D002831 4.0e-11 72.4 91 51.6
Glyma.15G108700 Glycine max HOM05D002437 ORTHO05D002831 5.2e-11 72.0 115 47.0
Solyc02g080640.4 Solanum lycopersicum HOM05D002437 ORTHO05D002831 5.2e-11 72.0 92 52.2
Sopen02g025350 Solanum pennellii HOM05D002437 ORTHO05D002831 5.2e-11 72.0 92 52.2
SGA_v2.0_scaffold7G03822 Striga asiatica HOM05D002437 ORTHO05D002831 5.2e-11 72.0 91 51.6
COL.COLO4_31790 Corchorus olitorius HOM05D002437 ORTHO05D002831 6.8e-11 71.6 91 52.7
Nitab4.5_0002827g0080 Nicotiana tabacum HOM05D002437 ORTHO05D002831 6.8e-11 71.6 91 51.6
Ciclev10015162m.g Citrus clementina HOM05D002437 ORTHO05D002831 8.9e-11 71.2 91 50.5
CsaV3_6G048960 Cucumis sativus L. HOM05D002437 ORTHO05D002831 8.9e-11 71.2 91 52.7
Duzib160G0896 Durio zibethinus HOM05D002437 ORTHO05D002831 8.9e-11 71.2 91 51.6
Nn1g07167 Nelumbo nucifera HOM05D002437 ORTHO05D002831 8.9e-11 71.2 108 49.1
Peaxi162Scf00147g00511 Petunia axillaris HOM05D002437 ORTHO05D002831 8.9e-11 71.2 91 54.9
QL08p009538 Quercus lobata HOM05D002437 ORTHO05D002831 8.9e-11 71.2 103 50.5
Glyma.09G004400 Glycine max HOM05D002437 ORTHO05D002831 1.2e-10 70.9 115 46.1
Gohir.D06G154800 Gossypium hirsutum HOM05D002437 ORTHO05D002831 1.2e-10 70.9 91 51.6
Gorai.010G180900 Gossypium raimondii HOM05D002437 ORTHO05D002831 1.2e-10 70.9 91 51.6
PGR004G0026 Punica granatum HOM05D002437 ORTHO05D002831 1.2e-10 70.9 92 51.1
QL05p072936 Quercus lobata HOM05D002437 ORTHO05D002831 1.2e-10 70.9 96 50.0
Gohir.A06G148700 Gossypium hirsutum HOM05D002437 ORTHO05D002831 1.5e-10 70.5 91 52.7
HanXRQChr05g0129431 Helianthus annuus HOM05D002437 ORTHO05D002831 1.5e-10 70.5 91 53.8
MBI02_g00378_MAGBIO Magnolia biondii HOM05D002437 ORTHO05D002831 1.5e-10 70.5 116 46.6
MBI02_g09975_MAGBIO Magnolia biondii HOM05D002437 ORTHO05D002831 1.5e-10 70.5 116 46.6
MD05G1348200 Malus domestica HOM05D002437 ORTHO05D002831 1.5e-10 70.5 91 53.8
PGSC0003DMG400016477 Solanum tuberosum HOM05D002437 ORTHO05D002831 1.5e-10 70.5 92 51.1
Lj1A1232T92 Lonicera japonica HOM05D002437 ORTHO05D002831 2.0e-10 70.1 91 52.7
Psat1g179680 Pisum sativum HOM05D002437 ORTHO05D002831 2.0e-10 70.1 91 51.6
Thecc.06G222500 Theobroma cacao HOM05D002437 ORTHO05D002831 2.0e-10 70.1 91 51.6
VMungo0540G2362 Vigna mungo HOM05D002437 ORTHO05D002831 2.0e-10 70.1 115 46.1
Haze_06811 Corylus avellana HOM05D002437 ORTHO05D002831 2.6e-10 69.7 92 50.0
Medtr2g023540 Medicago truncatula HOM05D002437 ORTHO05D002831 2.6e-10 69.7 93 49.5
CiPaw.09G093000 Carya illinoinensis HOM05D002437 ORTHO05D002831 3.4e-10 69.3 93 50.5
Carub.0002s0287 Capsella rubella HOM05D002437 ORTHO05D002831 4.4e-10 68.9 92 53.3
CiPaw.10G072000 Carya illinoinensis HOM05D002437 ORTHO05D002831 4.4e-10 68.9 91 51.6
Lsat_1_v5_gn_7_16240 Lactuca sativa HOM05D002437 ORTHO05D002831 4.4e-10 68.9 91 51.6
Oeu002743.1 Olea europaea HOM05D002437 ORTHO05D002831 4.4e-10 68.9 91 51.6
Sed0011125 Sechium edule HOM05D002437 ORTHO05D002831 4.4e-10 68.9 93 51.6
GSVIVG01004634001 Vitis vinifera HOM05D002437 ORTHO05D002831 4.4e-10 68.9 91 49.5
Atru.chr10.2242 Acer truncatum HOM05D002437 ORTHO05D002831 5.8e-10 68.6 116 47.4
HanXRQChr16g0515511 Helianthus annuus HOM05D002437 ORTHO05D002831 7.5e-10 68.2 113 45.1
Nitab4.5_0006396g0020 Nicotiana tabacum HOM05D002437 ORTHO05D002831 7.5e-10 68.2 91 49.5
PSO832G3649 Papaver somniferum HOM05D002437 ORTHO05D002831 7.5e-10 68.2 91 49.5
Dinv22252 Davidia involucrata HOM05D002437 ORTHO05D002831 9.8e-10 67.8 91 52.7
TPR.G13455 Trifolium pratense HOM05D002437 ORTHO05D002831 9.8e-10 67.8 91 49.5
GSVIVG01012712001 Vitis vinifera HOM05D002437 ORTHO05D002831 9.8e-10 67.8 85 50.6
MELO3C007398.2 Cucumis melo HOM05D002437 ORTHO05D002831 1.3e-09 67.4 91 50.5
MD10G1323000 Malus domestica HOM05D002437 ORTHO05D002831 1.3e-09 67.4 91 51.6
Nitab4.5_0007864g0060 Nicotiana tabacum HOM05D002437 ORTHO05D002831 1.3e-09 67.4 91 51.6
COL.COLO4_04289 Corchorus olitorius HOM05D002437 ORTHO05D002831 1.7e-09 67.0 89 48.3
Eucgr.D01338 Eucalyptus grandis HOM05D002437 ORTHO05D002831 1.7e-09 67.0 93 51.6
RcHm_v2.0_Chr5g0002761 Rosa chinensis HOM05D002437 ORTHO05D002831 1.7e-09 67.0 108 47.2
unitig_61.g26100 Utricularia gibba HOM05D002437 ORTHO05D002831 1.7e-09 67.0 91 47.3
Lj2C267T7 Lonicera japonica HOM05D002437 ORTHO05D002831 2.2e-09 66.6 91 51.6
THA.LOC104809496 Tarenaya hassleriana HOM05D002437 ORTHO05D002831 2.2e-09 66.6 92 54.3
CSS0035475 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 2.9e-09 66.2 91 53.8
Cfa000210 Carpinus fangiana HOM05D002437 ORTHO05D002831 2.9e-09 66.2 93 48.4
Oeu014930.1 Olea europaea HOM05D002437 ORTHO05D002831 2.9e-09 66.2 91 50.5
Prupe.4G019200 Prunus persica HOM05D002437 ORTHO05D002831 2.9e-09 66.2 91 51.6
PGR083G1495 Punica granatum HOM05D002437 ORTHO05D002831 2.9e-09 66.2 111 45.0
MSTRG.13135 Avicennia marina HOM05D002437 ORTHO05D002831 3.7e-09 65.9 91 50.5
CAN.G1014.3 Capsicum annuum HOM05D002437 ORTHO05D002831 3.7e-09 65.9 91 50.5
Phvul.006G149200 Phaseolus vulgaris HOM05D002437 ORTHO05D002831 3.7e-09 65.9 91 49.5
vmacro22536 Vaccinium macrocarpon HOM05D002437 ORTHO05D002831 3.7e-09 65.9 83 55.4
Oeu013630.1 Olea europaea HOM05D002437 ORTHO05D002831 4.9e-09 65.5 91 49.5
RhsimUnG0089100 Rhododendron simsii HOM05D002437 ORTHO05D002831 4.9e-09 65.5 91 47.3
AL2G13750 Arabidopsis lyrata HOM05D002437 ORTHO05D002831 6.4e-09 65.1 94 51.1
Thhalv10028642m.g Eutrema salsugineum HOM05D002437 ORTHO05D002831 6.4e-09 65.1 92 51.1
FvH4_3g01900 Fragaria vesca HOM05D002437 ORTHO05D002831 6.4e-09 65.1 91 49.5
AT4G04610 Arabidopsis thaliana HOM05D002437 ORTHO05D002831 8.3e-09 64.7 92 51.1
Gohir.A05G171200 Gossypium hirsutum HOM05D002437 ORTHO05D002831 8.3e-09 64.7 91 49.5
Gorai.009G179500 Gossypium raimondii HOM05D002437 ORTHO05D002831 8.3e-09 64.7 91 49.5
HanXRQChr15g0470721 Helianthus annuus HOM05D002437 ORTHO05D002831 8.3e-09 64.7 87 54.0
Duzib235G1449 Durio zibethinus HOM05D002437 ORTHO05D002831 1.1e-08 64.3 91 50.5
Migut.M01329 Erythranthe guttata HOM05D002437 ORTHO05D002831 1.1e-08 64.3 91 47.3
Nn1g03490 Nelumbo nucifera HOM05D002437 ORTHO05D002831 1.1e-08 64.3 107 45.8
Nitab4.5_0000005g0310 Nicotiana tabacum HOM05D002437 ORTHO05D002831 1.1e-08 64.3 91 48.4
arahy.Tifrunner.gnm1.ann1.FJ1N0Z Arachis hypogaea HOM05D002437 ORTHO05D002831 1.4e-08 63.9 134 40.3
CARHR252940 Cardamine hirsuta HOM05D002437 ORTHO05D002831 1.4e-08 63.9 94 50.0
Manes.16G006000 Manihot esculenta HOM05D002437 ORTHO05D002831 1.4e-08 63.9 86 53.5
QL08p032721 Quercus lobata HOM05D002437 ORTHO05D002831 1.4e-08 63.9 104 44.2
QL93p2020_0035 Quercus lobata HOM05D002437 ORTHO05D002831 1.4e-08 63.9 104 44.2
Sc17g0007430 Simmondsia chinensis HOM05D002437 ORTHO05D002831 1.4e-08 63.9 118 40.7
TWI38G0801 Tripterygium wilfordii HOM05D002437 ORTHO05D002831 1.4e-08 63.9 93 49.5
AT1G62180 Arabidopsis thaliana HOM05D002437 ORTHO05D002831 1.9e-08 63.5 94 50.0
Gohir.D05G174200 Gossypium hirsutum HOM05D002437 ORTHO05D002831 1.9e-08 63.5 91 48.4
THA.LOC104818752 Tarenaya hassleriana HOM05D002437 ORTHO05D002831 1.9e-08 63.5 83 53.0
Hma1.2p1_0673F.1_g201480 Hydrangea macrophylla HOM05D002437 ORTHO05D002831 2.4e-08 63.2 90 47.8
arahy.Tifrunner.gnm1.ann1.L2Y6DG Arachis hypogaea HOM05D002437 ORTHO05D002831 4.1e-08 62.4 134 39.6
Sp6g04320 Schrenkiella parvula HOM05D002437 ORTHO05D002831 4.1e-08 62.4 92 50.0
arahy.Tifrunner.gnm1.ann1.5H5XYM Arachis hypogaea HOM05D002437 ORTHO05D002831 5.4e-08 62.0 104 43.3
BcaC04g21311 Brassica carinata HOM05D002437 ORTHO05D002831 5.4e-08 62.0 115 40.0
C09p33300 Brassica napus HOM05D002437 ORTHO05D002831 5.4e-08 62.0 115 40.0
BolC9t56166H Brassica oleracea HOM05D002437 ORTHO05D002831 5.4e-08 62.0 115 40.0
Lalb_Chr15g0087651 Lupinus albus HOM05D002437 ORTHO05D002831 5.4e-08 62.0 91 47.3
Lalb_Chr18g0056421 Lupinus albus HOM05D002437 ORTHO05D002831 7.0e-08 61.6 91 45.1
Manes.17G026200 Manihot esculenta HOM05D002437 ORTHO05D002831 7.0e-08 61.6 94 46.8
A09p26210 Brassica napus HOM05D002437 ORTHO05D002831 9.2e-08 61.2 91 47.3
BraA09t38189Z Brassica rapa HOM05D002437 ORTHO05D002831 9.2e-08 61.2 91 47.3
PSO210G4275 Papaver somniferum HOM05D002437 ORTHO05D002831 9.2e-08 61.2 91 46.2
Sc05g0009260 Simmondsia chinensis HOM05D002437 ORTHO05D002831 9.2e-08 61.2 96 42.7
ECA236G1907 Erigeron canadensis HOM05D002437 ORTHO05D002831 1.6e-07 60.5 77 54.5
Thhalv10023459m.g Eutrema salsugineum HOM05D002437 ORTHO05D002831 1.6e-07 60.5 94 46.8
Lj6g0003909 Lotus japonicus HOM05D002437 ORTHO05D002831 1.6e-07 60.5 91 46.2
BcaB01g01819 Brassica carinata HOM05D002437 ORTHO05D002831 2.0e-07 60.1 92 44.6
MELO3C002450.2 Cucumis melo HOM05D002437 ORTHO05D002831 2.0e-07 60.1 105 43.8
CsaV3_1G010690 Cucumis sativus L. HOM05D002437 ORTHO05D002831 2.0e-07 60.1 110 42.7
SGA_v2.0_scaffold89G27468 Striga asiatica HOM05D002437 ORTHO05D002831 2.0e-07 60.1 92 51.1
arahy.Tifrunner.gnm1.ann1.E3Q78B Arachis hypogaea HOM05D002437 ORTHO05D002831 2.7e-07 59.7 104 42.3
EL10Ac8g20074 Beta vulgaris HOM05D002437 ORTHO05D002831 2.7e-07 59.7 103 46.6
Dinv40768 Davidia involucrata HOM05D002437 ORTHO05D002831 2.7e-07 59.7 118 43.2
Hund23459 Selenicereus undatus HOM05D002437 ORTHO05D002831 2.7e-07 59.7 98 49.0
MD03G1198900 Malus domestica HOM05D002437 ORTHO05D002831 3.5e-07 59.3 85 48.2
Migut.H01574 Erythranthe guttata HOM05D002437 ORTHO05D002831 4.6e-07 58.9 85 48.2
Thhalv10025134m.g Eutrema salsugineum HOM05D002437 ORTHO05D002831 4.6e-07 58.9 93 48.4
Hund21415 Selenicereus undatus HOM05D002437 ORTHO05D002831 4.6e-07 58.9 138 35.5
BcaC09g51173 Brassica carinata HOM05D002437 ORTHO05D002831 6.0e-07 58.5 93 44.1
BcaNung05106 Brassica carinata HOM05D002437 ORTHO05D002831 6.0e-07 58.5 93 44.1
A01p13370 Brassica napus HOM05D002437 ORTHO05D002831 6.0e-07 58.5 94 48.9
Glyma.07G261500 Glycine max HOM05D002437 ORTHO05D002831 6.0e-07 58.5 91 45.1
Aqoxy1G03596 Aquilegia oxysepala HOM05D002437 ORTHO05D002831 7.8e-07 58.2 94 46.8
C01p16090 Brassica napus HOM05D002437 ORTHO05D002831 7.8e-07 58.2 94 46.8
Cpa.g.sc12.285 Carica papaya HOM05D002437 ORTHO05D002831 7.8e-07 58.2 91 46.2
Solyc03g031620.3 Solanum lycopersicum HOM05D002437 ORTHO05D002831 7.8e-07 58.2 80 50.0
Sopen03g005490 Solanum pennellii HOM05D002437 ORTHO05D002831 7.8e-07 58.2 80 50.0
PGSC0003DMG402005074 Solanum tuberosum HOM05D002437 ORTHO05D002831 7.8e-07 58.2 80 50.0
AUR62043469 Chenopodium quinoa HOM05D002437 ORTHO05D002831 1.0e-06 57.8 95 44.2
Ah.09g234800 Amaranthus hybridus HOM05D002437 ORTHO05D002831 1.3e-06 57.4 94 44.7
Ah.14g087980 Amaranthus hybridus HOM05D002437 ORTHO05D002831 1.3e-06 57.4 118 44.1
Sp2g02490 Schrenkiella parvula HOM05D002437 ORTHO05D002831 1.7e-06 57.0 105 42.9
BcaC06g31882 Brassica carinata HOM05D002437 ORTHO05D002831 2.3e-06 56.6 92 45.7
CARHR049950 Cardamine hirsuta HOM05D002437 ORTHO05D002831 3.0e-06 56.2 80 52.5
Prupe.4G216100 Prunus persica HOM05D002437 ORTHO05D002831 3.0e-06 56.2 91 42.9
TWI38G2173 Tripterygium wilfordii HOM05D002437 ORTHO05D002831 3.0e-06 56.2 92 45.7
BcaNung01713 Brassica carinata HOM05D002437 ORTHO05D002831 3.9e-06 55.8 92 47.8
BraA01t01280Z Brassica rapa HOM05D002437 ORTHO05D002831 3.9e-06 55.8 94 45.7
ClCG03G004660 Citrullus lanatus HOM05D002437 ORTHO05D002831 5.0e-06 55.5 94 46.8
Sed0008709 Sechium edule HOM05D002437 ORTHO05D002831 5.0e-06 55.5 91 46.2
Sp7g20180 Schrenkiella parvula HOM05D002437 ORTHO05D002831 6.6e-06 55.1 94 48.9
Aqoxy1G02091 Aquilegia oxysepala HOM05D002437 ORTHO05D002831 8.6e-06 54.7 94 46.8
Aqoxy5G04093 Aquilegia oxysepala HOM05D002437 ORTHO05D002831 8.6e-06 54.7 94 46.8
A03p53180 Brassica napus HOM05D002437 ORTHO05D002831 8.6e-06 54.7 94 48.9
C07p51550 Brassica napus HOM05D002437 ORTHO05D002831 8.6e-06 54.7 94 48.9
BolC7t45653H Brassica oleracea HOM05D002437 ORTHO05D002831 8.6e-06 54.7 94 48.9
BraA03t14386Z Brassica rapa HOM05D002437 ORTHO05D002831 8.6e-06 54.7 94 48.9
Prupe.I005500 Prunus persica HOM05D002437 ORTHO05D002831 8.6e-06 54.7 106 39.6
Rhsim06G0218800 Rhododendron simsii HOM05D002437 ORTHO05D002831 8.6e-06 54.7 112 41.1


User provided reference genes

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