Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 5.2e-290 1000.3 511 100.0
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.8e-274 948.7 514 94.2
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 3.3e-188 662.1 514 69.3
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.4e-178 629.4 457 72.2
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 5.2e-141 505.4 513 55.0
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 4.9e-139 498.8 513 55.8
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.2e-134 484.2 535 52.7
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.0e-128 464.5 516 53.1
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 3.9e-128 462.6 516 51.7
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 8.7e-120 434.9 535 49.0
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 3.3e-119 433.0 517 49.7
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 7.4e-119 431.8 514 49.0
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.3e-118 431.0 511 49.9
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-118 431.0 514 48.8
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 3.4e-116 422.9 657 43.2
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.1e-114 417.9 647 41.7
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 2.4e-114 416.8 644 42.5
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 9.3e-114 414.8 536 47.6
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 3.5e-113 412.9 513 48.5
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 4.6e-113 412.5 457 51.0
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 4.3e-111 406.0 509 47.5
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.8e-107 392.9 638 41.7
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-106 391.3 643 41.1
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 5.5e-106 389.0 518 46.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 4.6e-105 386.0 513 46.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 5.1e-104 382.5 643 40.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.7e-103 379.0 643 40.6
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 2.8e-102 376.7 523 46.1
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.8e-102 376.7 643 40.1
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.1e-101 374.8 519 44.1
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.5e-100 370.9 513 44.1
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 5.9e-100 369.0 515 44.9
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.3e-99 367.9 643 39.7
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 4.1e-93 346.3 503 43.5
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.5e-92 344.4 614 38.6
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 2.0e-92 344.0 521 42.8
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.6e-92 343.6 393 49.9
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 5.0e-91 339.3 393 50.6
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.2e-90 336.3 482 45.2
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 9.4e-90 335.1 603 38.5
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 3.6e-89 333.2 390 48.7
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.8e-88 330.9 390 49.2
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 3.7e-86 323.2 413 45.5
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.1e-85 321.6 724 34.7
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 3.1e-85 320.1 582 38.0
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.5e-84 317.8 392 46.9
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 5.9e-84 315.8 584 37.5
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.0e-83 315.1 582 37.1
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.1e-82 311.6 495 41.8
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 4.2e-82 309.7 430 45.6
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.1e-81 307.4 477 41.9
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.1e-81 305.8 631 36.3
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 8.0e-81 305.4 588 37.2
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 2.3e-80 303.9 474 39.2
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 5.7e-79 299.3 823 31.0
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 4.7e-73 279.6 718 31.9
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 4.0e-72 276.6 415 44.6
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.2e-71 275.0 532 36.7
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 3.3e-71 273.5 391 40.4
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 6.3e-70 269.2 402 44.0
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 4.1e-69 266.5 304 51.3
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 7.0e-69 265.8 304 51.3
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.7e-67 261.2 516 36.0
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 5.0e-67 259.6 516 36.6
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 6.5e-67 259.2 876 29.0
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 8.5e-67 258.8 438 38.4
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.1e-65 254.2 239 53.6
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 8.0e-65 252.3 699 30.5
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 4.0e-64 250.0 614 31.8
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 5.7e-63 246.1 291 52.9
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 2.2e-62 244.2 674 30.4
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 8.3e-62 242.3 402 42.0
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 8.3e-62 242.3 525 36.0
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.1e-61 241.9 575 34.1
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.3e-59 234.2 240 49.6
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 8.6e-59 232.3 688 29.1
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 8.6e-59 232.3 344 43.3
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 7.2e-58 229.2 392 40.3
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.3e-54 218.4 733 27.7
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.3e-54 218.4 567 32.8
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.1e-53 215.3 729 28.4
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 2.4e-53 214.2 725 28.1
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 2.4e-53 214.2 711 28.7
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.4e-53 214.2 407 35.9
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.1e-53 213.4 605 30.7
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 4.5e-52 209.9 276 41.7
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 5.9e-52 209.5 441 34.5
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.3e-51 207.6 758 27.3
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.2e-49 201.8 711 27.7
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.4e-48 198.4 704 28.4
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 6.8e-48 196.1 553 28.9
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 9.8e-47 192.2 716 27.9
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 9.8e-47 192.2 284 45.4
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.2e-46 191.0 717 27.1
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.9e-46 190.7 716 27.7
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 2.9e-46 190.7 717 27.1
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.9e-46 189.9 607 29.2
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 8.3e-46 189.1 689 28.2
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.1e-45 188.7 726 26.9
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.1e-45 188.7 324 38.0
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 5.4e-45 186.4 711 27.8
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 7.0e-45 186.0 689 28.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.1e-41 174.5 223 43.9
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.1e-40 172.2 318 40.3
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 4.4e-39 166.8 560 27.7
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 9.8e-39 165.6 523 31.7
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.7e-38 164.9 504 31.3
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 3.7e-38 163.7 738 25.6
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.4e-37 159.8 368 34.8
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.4e-37 159.8 368 34.8
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 5.4e-37 159.8 249 39.8
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 7.8e-36 156.0 355 34.4
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 3.9e-35 153.7 288 38.5
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 3.3e-34 150.6 385 31.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.6e-34 149.8 452 31.4
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.6e-34 149.8 466 30.5
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 3.7e-30 137.1 110 58.2
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.4e-29 135.2 337 30.6
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 1.9e-29 134.8 249 36.9
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 3.2e-29 134.0 171 50.3
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.3e-27 128.6 149 44.3
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.3e-27 127.9 520 26.7
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.9e-27 127.1 348 29.3
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.3e-26 123.6 350 30.6
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.3e-26 123.6 350 30.6
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 6.6e-19 99.8 107 47.7
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.9e-13 81.6 110 40.9
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 5.4e-13 80.1 106 44.3
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 9.3e-13 79.3 495 24.0
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 6.0e-12 76.6 94 42.6
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.5e-07 60.5 93 47.3
Os08g0447500 Oryza sativa ssp. japonica HOM05D033117 ORTHO05D037222 1.7e-06 58.5 301 27.6


User provided reference genes

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