Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 2.5e-133 478.8 239 100.0
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.5e-53 213.8 112 92.9
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 8.1e-52 208.0 107 92.5
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.8e-51 206.8 107 92.5
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.1e-51 206.1 107 91.6
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.1e-51 206.1 107 91.6
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 6.8e-51 204.9 107 90.7
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.5e-50 203.8 107 92.5
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 3.4e-50 202.6 106 91.5
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.9e-49 199.5 110 90.0
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.9e-49 199.5 107 90.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 3.8e-49 199.1 110 90.0
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.8e-49 199.1 110 90.0
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.8e-49 199.1 110 90.0
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 6.4e-49 198.4 108 89.8
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 6.4e-49 198.4 143 69.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.1e-48 197.6 109 89.9
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.4e-48 197.2 109 89.0
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.9e-48 196.8 108 89.8
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.2e-48 196.1 103 92.2
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 4.1e-48 195.7 119 79.8
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.1e-48 195.7 101 93.1
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.1e-48 195.7 107 90.7
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.1e-48 195.7 107 86.0
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.1e-48 195.7 107 86.0
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 4.1e-48 195.7 107 90.7
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 5.4e-48 195.3 119 79.8
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 5.4e-48 195.3 107 86.0
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 7.1e-48 194.9 103 90.3
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 7.1e-48 194.9 106 86.8
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 9.2e-48 194.5 107 87.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.2e-47 194.1 106 86.8
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-47 193.7 104 89.4
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-47 193.7 104 89.4
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.6e-47 193.7 106 87.7
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 2.1e-47 193.4 107 85.0
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 3.5e-47 192.6 108 85.2
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 3.5e-47 192.6 107 85.0
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 3.5e-47 192.6 108 88.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 3.5e-47 192.6 108 86.1
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 4.6e-47 192.2 106 85.8
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-47 192.2 104 88.5
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-47 192.2 104 88.5
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 6.0e-47 191.8 104 87.5
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.0e-46 191.0 105 89.5
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.3e-46 190.7 107 87.9
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 2.3e-46 189.9 107 87.9
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.3e-46 189.9 108 86.1
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.0e-46 189.5 106 84.9
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 3.9e-46 189.1 107 85.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.9e-46 189.1 107 86.9
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 5.1e-46 188.7 149 65.8
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 6.6e-46 188.3 106 88.7
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.1e-45 187.6 104 87.5
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.1e-45 187.6 104 86.5
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.1e-45 187.6 106 82.1
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.1e-45 187.6 107 86.0
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.5e-45 187.2 108 85.2
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.9e-45 186.8 106 81.1
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 2.5e-45 186.4 103 88.3
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.5e-45 186.4 107 84.1
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 2.5e-45 186.4 104 86.5
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.3e-45 186.0 111 79.3
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.3e-45 186.0 107 86.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 4.3e-45 185.7 111 81.1
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 4.3e-45 185.7 107 85.0
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 4.3e-45 185.7 107 83.2
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 4.3e-45 185.7 107 83.2
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 5.6e-45 185.3 107 83.2
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 5.6e-45 185.3 107 83.2
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 5.6e-45 185.3 98 88.8
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 9.6e-45 184.5 103 87.4
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.2e-44 184.1 104 85.6
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.6e-44 183.7 111 79.3
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.6e-44 183.7 103 87.4
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.1e-44 183.3 107 83.2
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 2.1e-44 183.3 111 80.2
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.8e-44 183.0 107 80.4
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 4.7e-44 182.2 100 85.0
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 8.1e-44 181.4 106 82.1
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.4e-43 180.6 110 79.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.8e-43 180.3 98 87.8
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 3.1e-43 179.5 107 81.3
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 3.1e-43 179.5 106 80.2
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 3.1e-43 179.5 105 81.9
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 5.2e-43 178.7 106 81.1
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 9.0e-43 177.9 108 80.6
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 9.0e-43 177.9 99 88.9
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 1.5e-42 177.2 98 84.7
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 4.4e-42 175.6 99 84.8
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 4.4e-42 175.6 108 80.6
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 5.8e-42 175.3 98 83.7
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 5.8e-42 175.3 100 84.0
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 5.8e-42 175.3 98 84.7
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 7.6e-42 174.9 107 78.5
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 2.2e-41 173.3 106 79.2
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 2.9e-41 172.9 108 77.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.9e-41 172.9 98 82.7
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 3.8e-41 172.6 107 77.6
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 3.8e-41 172.6 107 77.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.9e-41 172.2 95 89.5
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.1e-40 171.0 107 77.6
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 2.4e-40 169.9 110 74.5
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 5.4e-40 168.7 108 77.8
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 5.4e-40 168.7 107 75.7
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.6e-39 167.2 107 77.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 4.6e-39 165.6 110 72.7
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 6.0e-39 165.2 98 80.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 7.8e-39 164.9 106 74.5
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.3e-38 164.1 107 73.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.7e-38 163.7 102 79.4
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.5e-37 160.6 107 75.7
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.5e-37 159.8 103 75.7
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 3.6e-36 156.0 107 70.1
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 6.2e-36 155.2 105 71.4
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-35 154.5 112 66.1
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-35 154.5 107 69.2
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-35 154.5 107 69.2
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 1.4e-35 154.1 107 69.2
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 1.4e-35 154.1 107 69.2
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.4e-35 153.3 107 68.2
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 4.0e-35 152.5 107 67.3
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.0e-34 150.2 107 69.2
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 3.4e-34 149.4 108 68.5
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 3.4e-34 149.4 108 68.5
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 3.4e-34 149.4 108 68.5
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 3.4e-34 149.4 108 68.5
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 4.5e-34 149.1 107 65.4
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 5.8e-34 148.7 107 66.4
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.3e-33 147.5 107 67.3
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.7e-33 147.1 107 66.4
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 4.9e-33 145.6 87 85.1
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.4e-32 144.1 102 66.7
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 4.2e-32 142.5 99 68.7
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 7.1e-32 141.7 107 65.4
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 7.1e-32 141.7 108 70.4
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 4.6e-31 139.0 103 65.0
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 6.7e-30 135.2 92 73.9
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.3e-28 131.0 66 92.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.1e-27 127.9 98 62.2
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.0e-26 123.6 81 74.1
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 4.5e-26 122.5 81 72.8
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.8e-26 122.1 91 68.1
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 7.6e-26 121.7 78 82.1
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 3.8e-25 119.4 96 65.6
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 8.4e-25 118.2 96 65.6
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-24 117.9 91 64.8
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 3.2e-24 116.3 93 63.4
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.0e-22 111.3 88 64.8
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.0e-22 109.8 97 58.8
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 8.2e-20 101.7 56 83.9
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 9.0e-19 98.2 87 57.5
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 2.0e-18 97.1 58 81.0
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.6e-18 96.7 59 83.1
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 4.5e-18 95.9 57 77.2
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.0e-17 94.7 56 76.8
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.3e-17 94.4 107 53.3
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.7e-17 94.0 79 64.6
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 8.2e-12 75.1 86 47.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 3.1e-11 73.2 44 77.3
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 5.9e-10 68.9 77 50.6
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.2e-07 61.2 88 40.9


User provided reference genes

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