Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 8.2e-268 926.8 576 100.0
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 2.8e-239 832.0 549 96.0
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 1.2e-234 816.6 549 93.1
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 4.6e-194 681.8 617 76.3
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.1e-171 607.4 608 73.7
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 4.5e-149 532.3 376 75.5
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 2.1e-146 523.5 603 65.2
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 1.0e-140 504.6 582 66.8
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 3.8e-140 502.7 594 64.6
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.2e-138 497.7 581 67.1
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 5.7e-136 488.8 582 66.2
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 5.3e-134 482.3 581 64.7
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 3.8e-132 476.1 446 74.7
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 1.1e-131 474.6 597 62.0
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 1.5e-131 474.2 586 61.4
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 5.5e-131 472.2 555 66.7
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 1.2e-130 471.1 538 61.7
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 1.6e-130 470.7 527 69.1
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 6.1e-130 468.8 589 62.8
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.2e-127 460.3 588 63.8
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.2e-127 460.3 588 63.8
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 1.1e-126 458.0 603 58.9
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.4e-126 457.6 581 63.0
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 5.4e-126 455.7 448 74.8
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 1.6e-125 454.1 585 61.0
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 2.3e-124 450.3 575 63.0
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.2e-122 444.5 581 62.1
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 2.1e-122 443.7 578 56.2
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 3.0e-121 439.9 475 69.3
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 8.9e-121 438.3 455 73.0
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.2e-120 438.0 494 66.2
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.5e-120 437.6 447 70.2
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 3.4e-120 436.4 590 59.0
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 4.9e-119 432.6 610 58.4
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 4.1e-118 429.5 446 65.7
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 9.2e-118 428.3 447 68.7
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 1.6e-117 427.6 606 58.1
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 2.0e-117 427.2 605 57.4
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 3.5e-117 426.4 605 57.4
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 4.5e-117 426.0 532 60.7
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 7.8e-117 425.2 459 68.4
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.0e-116 424.9 620 57.1
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 8.6e-116 421.8 576 59.0
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 7.3e-115 418.7 597 57.8
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 7.3e-115 418.7 443 69.3
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 2.3e-113 413.7 580 60.2
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 4.0e-113 412.9 397 56.9
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 5.2e-113 412.5 506 63.2
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 1.2e-112 411.4 462 67.5
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.5e-112 411.0 503 64.4
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.9e-111 406.8 490 64.7
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 2.9e-111 406.8 587 57.9
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 3.7e-111 406.4 575 59.7
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.7e-111 406.4 606 57.6
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 4.9e-111 406.0 575 59.7
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 4.9e-111 406.0 446 68.6
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 9.2e-110 401.7 448 59.8
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.2e-104 384.8 572 58.0
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 3.4e-104 383.3 473 63.0
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 9.8e-104 381.7 576 52.4
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 9.2e-102 375.2 514 60.1
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.7e-101 373.6 452 66.6
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 3.5e-101 373.2 579 57.7
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 4.6e-101 372.9 530 58.7
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 4.6e-101 372.9 593 56.8
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 1.9e-99 367.5 451 65.0
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.5e-99 367.1 516 61.2
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 3.3e-99 366.7 465 64.1
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.2e-98 364.8 412 47.8
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 2.8e-98 363.6 452 63.5
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 3.6e-98 363.2 613 40.1
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 6.2e-98 362.5 412 47.6
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 1.1e-97 361.7 589 55.5
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 3.4e-96 356.7 589 53.7
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 4.9e-95 352.8 585 53.8
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 8.3e-95 352.1 573 54.5
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 4.1e-94 349.7 587 55.5
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 1.9e-91 340.9 502 59.0
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 1.2e-90 338.2 488 58.6
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.1e-89 335.1 597 52.8
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 1.8e-89 334.3 484 58.1
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 8.9e-89 332.0 584 54.1
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 1.1e-86 325.1 574 54.2
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 2.4e-86 323.9 586 53.1
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 3.2e-86 323.6 578 53.8
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 4.2e-86 323.2 425 43.5
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.7e-85 320.5 272 58.5
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 7.8e-85 318.9 586 53.4
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.7e-84 317.8 476 50.4
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 8.7e-84 315.5 584 53.6
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 4.3e-83 313.2 547 54.8
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 2.8e-82 310.5 585 52.3
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 5.3e-81 306.2 519 55.7
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 4.4e-80 303.1 575 50.8
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 5.8e-80 302.8 575 52.3
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 9.9e-80 302.0 578 52.4
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 3.8e-79 300.1 578 52.2
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 2.4e-78 297.4 471 39.7
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 6.0e-77 292.7 322 50.3
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 3.9e-76 290.0 575 52.2
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 3.9e-76 290.0 575 52.2
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 3.3e-75 287.0 405 44.9
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 2.1e-74 284.3 582 51.2
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 3.4e-72 276.9 463 57.2
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 8.4e-71 272.3 494 38.5
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.3e-68 265.0 425 38.6
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 4.5e-64 250.0 255 50.6
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 6.0e-61 239.6 433 49.0
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 2.8e-58 230.7 540 45.2
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 5.8e-56 223.0 282 49.3
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 1.1e-46 192.2 204 53.4
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 1.7e-42 178.3 443 46.7
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.4e-40 170.6 362 32.6
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.2e-37 162.2 345 34.8
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 4.4e-35 153.7 411 29.7
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 7.4e-35 152.9 298 34.9
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.3e-34 152.1 280 36.4
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 3.7e-34 150.6 272 35.3
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 3.7e-34 150.6 272 35.3
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 1.2e-32 145.6 267 37.8
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 2.8e-26 124.4 265 33.2
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.1e-22 112.5 65 83.1
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 2.5e-22 111.3 140 50.7
Haze_08353 Corylus avellana HOM05D042623 ORTHO05D008020 3.2e-22 110.9 97 61.9
Haze_12997 Corylus avellana HOM05D042623 ORTHO05D008020 1.0e-20 105.9 63 82.5
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 2.0e-19 101.7 65 72.3
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 1.3e-18 99.0 200 36.0
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 2.2e-18 98.2 204 38.2
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 2.0e-16 91.7 66 65.2
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 2.2e-15 88.2 134 37.3
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 1.9e-14 85.1 112 43.8
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 2.5e-14 84.7 71 54.9
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 2.5e-14 84.7 65 64.6
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 8.8e-12 76.3 144 36.1
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 5.7e-11 73.6 90 45.6
Eucgr.A00778 Eucalyptus grandis HOM05D007661 ORTHO05D009671 6.3e-10 70.1 170 25.9
Thecc.05G264500 Theobroma cacao HOM05D007661 ORTHO05D009671 6.3e-10 70.1 180 23.9
Gorai.013G189200 Gossypium raimondii HOM05D007661 ORTHO05D009671 1.8e-09 68.6 176 25.6
Gorai.013G189900 Gossypium raimondii HOM05D007661 ORTHO05D009671 1.8e-09 68.6 176 25.6
Cpa.g.sc93.21 Carica papaya HOM05D004670 ORTHO05D022223 2.4e-09 68.2 122 34.4
Gohir.D13G171600 Gossypium hirsutum HOM05D007661 ORTHO05D009671 7.0e-09 66.6 176 25.0
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 7.0e-09 66.6 43 72.1
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 9.2e-09 66.2 202 23.8
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 2.0e-08 65.1 166 25.9
Peaxi162Scf00301g00516 Petunia axillaris HOM05D030372 ORTHO05D025854 7.7e-08 63.2 133 33.1
Peaxi162Scf00301g00517 Petunia axillaris HOM05D030372 ORTHO05D025854 7.7e-08 63.2 133 33.1
Peaxi162Scf00301g00518 Petunia axillaris HOM05D030372 ORTHO05D025854 7.7e-08 63.2 133 33.1
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 2.9e-07 61.2 190 26.8
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 3.8e-07 60.8 145 29.0
Prupe.6G215900 Prunus persica HOM05D000424 ORTHO05D000355 3.8e-07 60.8 213 24.4
Solyc09g097840.2 Solanum lycopersicum HOM05D007661 ORTHO05D009671 3.8e-07 60.8 159 24.5
ClCG01G017840 Citrullus lanatus HOM05D000424 ORTHO05D000355 6.6e-07 60.1 214 24.8
Sed0023429 Sechium edule HOM05D000424 ORTHO05D000355 8.6e-07 59.7 206 23.8
Aqoxy3G00841 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.5e-06 58.9 208 23.1
Cpa.g.sc65.121 Carica papaya HOM05D000424 ORTHO05D000355 1.5e-06 58.9 154 28.6
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 1.5e-06 58.9 281 23.8
Thhalv10018469m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.9e-06 58.5 202 26.2
Oeu052452.1 Olea europaea HOM05D005362 ORTHO05D006895 1.9e-06 58.5 195 24.1
MELO3C026690.2 Cucumis melo HOM05D000424 ORTHO05D000355 2.5e-06 58.2 214 24.8
Potri.019G025700 Populus trichocarpa HOM05D007661 ORTHO05D009671 2.5e-06 58.2 179 24.0
TWI39G0099 Tripterygium wilfordii HOM05D006218 ORTHO05D007338 2.5e-06 58.2 178 27.0
CsaV3_5G014140 Cucumis sativus L. HOM05D000424 ORTHO05D000355 3.3e-06 57.8 214 23.8
Sopen09g035780 Solanum pennellii HOM05D007661 ORTHO05D009671 3.3e-06 57.8 159 23.9
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 4.3e-06 57.4 166 25.3
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 4.3e-06 57.4 165 23.6
BcaB05g25042 Brassica carinata HOM05D000424 ORTHO05D000355 5.6e-06 57.0 182 25.8
CANSAT25G1384 Cannabis sativa HOM05D000424 ORTHO05D000355 7.3e-06 56.6 174 25.9
CsaV3_6G034100 Cucumis sativus L. HOM05D000424 ORTHO05D000355 7.3e-06 56.6 182 23.1
Sed0020730 Sechium edule HOM05D000424 ORTHO05D000355 7.3e-06 56.6 217 24.0
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 7.3e-06 56.6 213 23.5
MSTRG.6423 Avicennia marina HOM05D000424 ORTHO05D000355 9.5e-06 56.2 160 26.2
A06p32690 Brassica napus HOM05D000424 ORTHO05D000355 9.5e-06 56.2 211 26.1
BraA06t26198Z Brassica rapa HOM05D000424 ORTHO05D000355 9.5e-06 56.2 211 26.1
Ca_18348_v3 Cicer arietinum L. HOM05D007661 ORTHO05D009671 9.5e-06 56.2 175 22.9
ClCG08G005980 Citrullus lanatus HOM05D000424 ORTHO05D000355 9.5e-06 56.2 206 21.4


User provided reference genes

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