Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 2.0e-107 392.5 206 100.0
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 4.3e-70 268.5 205 64.4
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 2.4e-68 262.7 201 70.1
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 5.9e-67 258.1 205 65.9
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.3e-66 256.9 205 68.8
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 5.0e-66 255.0 205 68.3
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 6.5e-66 254.6 198 64.1
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 1.9e-65 253.1 205 67.8
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 4.2e-65 251.9 194 66.0
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 9.4e-65 250.8 202 64.4
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 1.6e-64 250.0 207 61.4
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 2.7e-64 249.2 199 63.8
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 7.9e-64 247.7 207 60.4
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 7.9e-64 247.7 191 68.1
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 1.0e-63 247.3 202 63.4
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 1.4e-63 246.9 200 62.0
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.4e-63 246.9 205 61.5
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 6.7e-63 244.6 190 65.8
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 1.1e-62 243.8 202 59.9
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 2.0e-62 243.0 156 73.7
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 2.6e-62 242.7 191 67.0
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 2.6e-62 242.7 204 65.7
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 4.4e-62 241.9 202 60.9
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 7.4e-62 241.1 202 57.4
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.3e-61 240.4 202 57.4
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.7e-61 240.0 179 68.2
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 2.2e-61 239.6 194 60.8
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 4.8e-61 238.4 156 71.8
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 8.2e-61 237.7 218 61.5
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.1e-60 237.3 207 61.8
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 1.8e-60 236.5 207 58.5
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 3.1e-60 235.7 199 58.8
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 9.1e-60 234.2 194 60.3
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 1.2e-59 233.8 205 56.6
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 2.0e-59 233.0 199 58.8
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 5.9e-59 231.5 188 63.3
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 7.7e-59 231.1 194 58.8
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 7.7e-59 231.1 203 62.1
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 1.0e-58 230.7 201 59.7
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.2e-58 229.6 207 57.5
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 2.9e-58 229.2 177 61.0
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.9e-58 229.2 199 57.8
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 2.9e-58 229.2 190 60.0
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 3.8e-58 228.8 200 58.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 3.8e-58 228.8 190 62.1
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 5.0e-58 228.4 204 57.8
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 1.1e-57 227.3 156 67.9
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 1.9e-57 226.5 202 56.9
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 7.2e-57 224.6 156 67.9
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 7.2e-57 224.6 201 57.2
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.2e-56 223.8 156 68.6
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.6e-56 223.4 213 53.1
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 3.6e-56 222.2 200 56.5
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 7.9e-56 221.1 203 55.7
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 1.4e-55 220.3 214 57.9
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 1.4e-55 220.3 205 56.1
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.9e-55 218.8 202 55.4
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.9e-55 218.8 202 55.4
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 1.5e-54 216.9 203 55.2
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 9.7e-54 214.2 203 54.7
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.8e-52 209.9 191 61.3
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.8e-52 209.9 209 54.1
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.8e-52 209.9 172 57.6
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 3.1e-52 209.1 190 61.1
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 4.1e-52 208.8 193 56.0
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 7.0e-52 208.0 184 56.0
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 9.1e-52 207.6 192 52.6
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 9.1e-52 207.6 190 61.6
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 4.5e-51 205.3 182 57.1
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 1.3e-50 203.8 200 53.0
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 8.5e-50 201.1 185 56.8
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.9e-49 199.9 200 52.0
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.5e-49 199.5 176 57.4
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 3.2e-49 199.1 191 60.2
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 4.2e-49 198.7 176 57.4
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 7.2e-49 198.0 204 61.3
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 1.2e-48 197.2 200 50.0
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 1.2e-48 197.2 199 49.7
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.2e-48 197.2 124 74.2
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 3.6e-48 195.7 157 60.5
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 2.3e-47 193.0 124 73.4
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 1.5e-46 190.3 156 57.1
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 2.6e-46 189.5 193 54.4
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 2.6e-46 189.5 193 54.4
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 2.6e-46 189.5 156 57.1
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 2.6e-46 189.5 156 57.1
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 2.6e-46 189.5 197 49.2
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 4.4e-46 188.7 192 55.2
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 5.7e-46 188.3 182 51.1
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 3.1e-44 182.6 148 57.4
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 4.1e-44 182.2 147 56.5
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 3.5e-43 179.1 162 56.2
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 5.9e-43 178.3 187 48.1
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 3.8e-42 175.6 157 64.3
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 1.6e-40 170.2 124 61.3
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 3.0e-39 166.0 123 64.2
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.7e-38 161.8 182 44.5
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.3e-37 160.6 192 46.4
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 2.0e-35 153.3 179 48.0
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 2.7e-35 152.9 123 59.3
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 9.5e-33 144.4 123 57.7
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 2.1e-32 143.3 131 52.7
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 5.2e-31 138.7 97 63.9
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 7.5e-30 134.8 102 61.8
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.4e-28 130.6 101 60.4
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 4.1e-28 129.0 110 50.0
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 3.5e-27 125.9 131 46.6
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 2.3e-26 123.2 127 56.7
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 8.6e-26 121.3 94 61.7
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 4.0e-23 112.5 121 50.4
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 5.2e-23 112.1 89 59.6
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 6.8e-23 111.7 82 62.2
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 1.5e-22 110.5 119 44.5
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.3e-21 107.5 109 50.5
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.3e-21 107.5 119 47.1
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 5.4e-20 102.1 128 39.8
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 5.4e-20 102.1 128 39.8
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 1.6e-19 100.5 87 54.0
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 1.1e-17 94.4 106 42.5
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 2.8e-16 89.7 69 62.3
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 6.2e-16 88.6 64 65.6
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 1.9e-12 77.0 108 38.9
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 2.4e-12 76.6 68 48.5
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 3.2e-12 76.3 63 54.0
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 4.1e-12 75.9 129 33.3
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.2e-11 74.3 81 50.6
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 3.5e-11 72.8 58 60.3
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 3.9e-10 69.3 63 47.6
SHI10091 Sapria himalayana HOM05D000172 ORTHO05D008216 3.1e-07 59.7 62 51.6
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 1.5e-06 57.4 106 33.0
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 1.5e-06 57.4 106 33.0


User provided reference genes

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