Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 0.0e+00 1475.3 769 100.0
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 0.0e+00 1384.4 749 96.5
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 0.0e+00 1218.8 770 81.7
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 0.0e+00 1114.4 718 81.3
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 0.0e+00 1100.1 765 74.6
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 0.0e+00 1092.0 766 73.6
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 4.4e-309 1064.3 767 71.7
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.5e-306 1054.7 783 70.8
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.6e-306 1054.3 766 72.3
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 7.8e-306 1053.5 769 71.4
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 3.0e-305 1051.6 763 72.9
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.5e-304 1048.5 767 70.4
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 3.3e-304 1048.1 764 71.9
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.2e-303 1046.2 780 70.8
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.2e-303 1046.2 763 72.0
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.3e-302 1042.0 766 71.4
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.5e-301 1039.3 766 70.4
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.2e-300 1035.4 770 70.0
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 3.2e-299 1031.6 764 70.8
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.8e-298 1026.9 778 69.9
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 3.0e-297 1025.0 765 69.3
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.4e-294 1016.1 770 69.0
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 5.2e-294 1014.2 769 68.5
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 9.8e-293 1010.0 718 73.3
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 3.7e-292 1008.1 770 67.8
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 5.1e-289 997.7 769 67.1
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 6.8e-286 987.3 782 67.4
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.0e-285 985.7 770 67.5
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 5.8e-285 984.2 768 67.8
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.7e-284 982.6 770 66.6
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 3.7e-284 981.5 770 66.0
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 4.1e-283 978.0 770 66.0
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 7.8e-282 973.8 771 65.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 8.6e-281 970.3 773 65.7
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.2e-279 966.5 766 66.2
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 4.0e-278 961.4 769 67.5
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 2.0e-277 959.1 773 64.9
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 5.8e-277 957.6 812 63.2
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 2.4e-275 952.2 743 67.0
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 5.1e-273 944.5 771 63.4
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.1e-272 943.3 769 64.1
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 2.1e-271 939.1 791 63.1
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 8.1e-271 937.2 769 63.7
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 4.0e-270 934.9 768 63.4
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 4.5e-269 931.4 769 63.1
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.0e-265 920.2 768 62.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.8e-265 919.5 769 63.2
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 2.3e-265 919.1 742 65.5
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.5e-264 916.4 764 62.2
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 9.6e-264 913.7 769 62.3
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.3e-263 913.3 769 62.5
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.1e-262 910.2 768 62.1
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 5.8e-261 904.4 770 60.6
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 7.6e-261 904.0 763 62.4
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 4.9e-260 901.4 792 60.9
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 4.9e-260 901.4 791 60.7
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 2.3e-257 892.5 768 63.7
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 5.1e-257 891.3 769 61.6
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.9e-256 889.4 770 61.7
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 9.6e-256 887.1 766 60.1
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 9.6e-256 887.1 694 66.1
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.5e-253 879.8 776 60.4
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.5e-253 879.8 774 59.7
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 5.8e-253 877.9 767 60.1
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.0e-252 877.1 766 60.1
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 3.8e-252 875.2 784 59.7
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 3.2e-251 872.1 784 59.6
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 7.1e-251 870.9 770 58.7
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.0e-249 867.1 778 59.9
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.3e-249 866.7 770 58.6
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 2.5e-248 862.4 772 60.1
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 2.2e-244 849.4 788 57.1
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.1e-243 847.0 572 75.2
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 9.3e-243 844.0 767 59.5
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.6e-242 843.2 769 59.0
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.1e-242 842.8 768 58.3
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 2.3e-241 839.3 772 59.1
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.5e-240 835.9 574 73.7
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 6.9e-238 827.8 736 60.5
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 6.9e-238 827.8 737 60.7
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.9e-236 822.4 811 55.2
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 3.2e-235 818.9 568 74.5
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.3e-231 807.0 737 58.8
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 3.4e-229 798.9 742 61.1
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 2.9e-228 795.8 761 59.8
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.8e-228 795.4 769 56.4
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.5e-224 783.5 571 70.4
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.1e-222 777.3 714 60.9
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.8e-222 776.5 569 70.1
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 2.0e-221 773.1 569 70.3
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 7.7e-221 771.2 571 71.3
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.2e-218 763.8 770 54.0
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.2e-218 763.8 767 55.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 2.7e-213 746.1 587 65.2
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 3.5e-213 745.7 772 51.7
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 5.5e-211 738.4 516 74.0
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 6.8e-209 731.5 660 57.9
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 6.3e-207 724.9 649 59.2
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-206 724.2 769 51.2
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.8e-206 723.4 745 54.4
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 2.5e-203 713.0 573 64.0
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 6.3e-199 698.4 769 52.3
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.6e-187 658.7 529 66.2
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 4.7e-186 655.6 529 63.7
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.4e-182 643.3 461 72.9
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 3.5e-181 639.4 771 48.1
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 5.6e-179 632.1 512 64.6
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.2e-160 571.2 783 41.3
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 7.1e-158 562.0 641 49.0
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-155 554.7 530 55.1
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.3e-135 488.0 572 51.7
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.9e-135 486.9 496 55.0
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 2.9e-135 486.9 437 57.7
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 4.2e-134 483.0 333 73.9
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-121 441.4 326 69.9
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 5.9e-112 409.5 284 73.2
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 4.2e-110 403.3 291 69.8
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 8.8e-108 395.6 387 55.6
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 7.0e-105 386.0 833 31.7
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 9.1e-105 385.6 482 47.7
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 9.4e-94 349.0 284 63.7
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.6e-93 348.2 284 65.1
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.1e-89 334.0 745 30.5
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.7e-87 328.2 230 73.0
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 4.7e-85 320.1 763 29.1
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 7.0e-81 306.2 350 46.0
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 2.9e-74 284.3 177 79.7
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 3.7e-74 283.9 218 65.1
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.1e-65 255.8 223 60.5
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 8.1e-61 239.6 198 63.6
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.1e-57 229.2 253 53.4
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 2.1e-56 224.9 641 26.4
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 4.6e-48 197.2 251 46.6
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.0e-47 194.5 422 34.6
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.6e-47 193.4 422 34.4
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.2e-45 189.1 141 69.5
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 5.1e-39 167.2 199 47.7
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 5.3e-28 130.6 111 65.8
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 5.8e-27 127.1 95 66.3
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.2e-25 121.3 80 73.8
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 3.0e-23 114.8 178 39.9
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 7.4e-22 110.2 147 39.5
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.3e-18 99.4 76 63.2
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 4.9e-18 97.4 112 50.0
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.4e-18 96.7 249 32.9
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.9e-14 85.5 68 60.3
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-11 74.3 105 36.2
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 7.2e-09 67.0 106 43.4
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 1.4e-07 62.8 73 42.5
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 1.8e-07 62.4 125 33.6
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 6.7e-07 60.5 35 82.9
Nn5g29172 Nelumbo nucifera HOM05D004734 ORTHO05D272015 4.3e-06 57.8 59 45.8


User provided reference genes

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