Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 2.8e-54 214.9 102 100.0
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.7e-51 205.7 102 95.1
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 8.0e-41 170.2 108 76.9
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 5.2e-40 167.5 106 74.5
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.3e-35 152.9 102 70.6
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.2e-35 152.1 110 68.2
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 3.8e-35 151.4 103 68.9
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 5.0e-35 151.0 109 68.8
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.9e-34 149.1 111 67.6
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.6e-33 146.0 109 65.1
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.7e-33 145.2 111 63.1
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 4.7e-33 144.4 108 65.7
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 8.0e-33 143.7 109 65.1
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.0e-32 143.3 113 66.4
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.0e-32 143.3 110 65.5
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.8e-32 142.5 122 63.1
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.3e-32 142.1 109 62.4
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.3e-32 142.1 108 66.7
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 3.0e-32 141.7 110 61.8
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.0e-32 141.4 109 66.1
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.0e-32 141.4 109 66.1
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.0e-32 141.4 109 66.1
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.0e-32 141.4 109 62.4
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.8e-32 140.2 110 64.5
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.2e-31 139.8 105 63.8
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.5e-31 139.4 107 66.4
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.0e-31 139.0 107 66.4
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.4e-31 138.3 112 61.6
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.4e-31 138.3 112 61.6
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.4e-31 138.3 106 60.4
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 4.4e-31 137.9 108 65.7
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 4.4e-31 137.9 108 65.7
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 5.7e-31 137.5 111 61.3
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 7.5e-31 137.1 108 63.9
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 9.8e-31 136.7 109 61.5
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 9.8e-31 136.7 112 60.7
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.7e-30 136.0 102 61.8
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.7e-30 136.0 108 63.9
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.8e-30 135.2 104 64.4
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.8e-30 134.4 107 65.4
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.8e-30 134.4 104 63.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.3e-30 134.0 104 63.5
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.4e-29 132.9 107 62.6
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 4.1e-29 131.3 109 63.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 4.1e-29 131.3 110 60.0
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 5.4e-29 131.0 103 64.1
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 2.0e-28 129.0 119 62.2
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.7e-28 128.6 108 59.3
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.5e-28 128.3 107 62.6
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.5e-28 128.3 107 62.6
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 3.5e-28 128.3 92 62.0
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 4.5e-28 127.9 109 64.2
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 4.5e-28 127.9 108 63.9
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 4.5e-28 127.9 108 63.9
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 5.9e-28 127.5 109 62.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 7.7e-28 127.1 107 59.8
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.3e-27 126.3 110 57.3
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.9e-27 125.2 115 58.3
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.0e-27 124.4 110 60.0
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 5.0e-27 124.4 88 67.0
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 6.5e-27 124.0 104 60.6
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.5e-26 122.9 114 61.4
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.5e-26 122.9 110 56.4
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.9e-26 122.5 106 59.4
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 1.9e-26 122.5 97 61.9
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 3.3e-26 121.7 102 53.9
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.3e-26 121.7 108 57.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 9.5e-26 120.2 98 61.2
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.2e-25 119.8 111 57.7
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.2e-25 119.8 89 62.9
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.6e-25 119.4 108 57.4
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.6e-25 119.4 88 62.5
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 2.1e-25 119.0 102 62.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.8e-25 118.6 96 56.2
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.1e-25 117.5 100 56.0
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 6.1e-25 117.5 123 55.3
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 6.1e-25 117.5 106 58.5
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.0e-24 116.7 90 62.2
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 2.6e-23 112.1 108 52.8
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.7e-23 110.9 110 51.8
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.2e-22 109.0 104 53.8
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.8e-22 108.6 106 52.8
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.8e-22 108.6 110 54.5
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 2.8e-22 108.6 86 65.1
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.8e-22 108.6 91 54.9
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 3.7e-22 108.2 107 57.0
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 6.3e-22 107.5 109 52.3
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.4e-21 106.3 105 51.4
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.4e-21 106.3 105 51.4
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.4e-21 106.3 123 52.8
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 4.1e-21 104.8 105 50.5
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 4.1e-21 104.8 99 56.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 4.1e-21 104.8 108 50.9
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.4e-21 104.4 112 50.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 7.0e-21 104.0 94 55.3
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 9.2e-21 103.6 108 52.8
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.2e-20 103.2 106 50.0
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.2e-20 103.2 105 49.5
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.2e-20 103.2 113 48.7
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.7e-20 102.1 102 50.0
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 2.7e-20 102.1 109 50.5
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.5e-20 101.7 93 54.8
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 3.5e-20 101.7 113 55.8
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 7.8e-20 100.5 110 48.2
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.3e-19 99.8 93 54.8
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.3e-19 99.0 103 54.4
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.9e-19 98.6 102 49.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.9e-19 98.6 103 50.5
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.1e-18 96.7 76 55.3
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.5e-18 96.3 101 48.5
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.9e-18 95.9 102 48.0
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.9e-18 95.9 102 48.0
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.5e-18 95.5 102 48.0
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.5e-18 95.5 102 48.0
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.5e-18 95.5 102 48.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.5e-18 95.5 114 45.6
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 3.3e-18 95.1 102 48.0
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 9.5e-18 93.6 88 56.8
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.2e-17 93.2 88 55.7
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.6e-17 92.8 107 45.8
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.6e-17 91.7 105 46.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 6.1e-17 90.9 97 51.5
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 6.1e-17 90.9 114 44.7
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 8.0e-17 90.5 95 47.4
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 8.0e-17 90.5 86 51.2
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.0e-16 90.1 116 43.1
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.3e-16 89.0 102 44.1
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 3.0e-16 88.6 90 46.7
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.0e-16 88.6 116 44.0
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.0e-16 88.2 116 44.0
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 9.8e-15 83.6 107 43.9
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 9.8e-15 83.6 110 44.5
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.3e-14 83.2 60 65.0
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.2e-14 82.4 97 48.5
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.9e-14 82.0 99 52.5
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 2.9e-14 82.0 53 62.3
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.7e-14 81.6 101 40.6
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.8e-13 79.3 112 44.6
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 9.2e-13 77.0 83 51.8
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 1.0e-11 73.6 111 34.2
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 3.9e-11 71.6 112 40.2
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.0e-11 71.2 88 44.3
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.1e-10 70.1 105 43.8
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 4.3e-10 68.2 103 43.7
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 2.1e-09 65.9 116 39.7
MBI19_g06152_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 4.7e-09 64.7 102 37.3


User provided reference genes

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