Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 1.5e-149 533.1 325 100.0
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 5.1e-134 481.5 327 84.4
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 1.8e-99 366.7 221 91.0
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 6.6e-97 358.2 324 65.7
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 2.8e-95 352.8 325 64.0
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 3.4e-93 345.9 325 63.1
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 2.3e-89 333.2 323 59.1
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 2.1e-87 326.6 327 59.9
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 5.2e-86 322.0 323 60.4
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.7e-84 317.0 325 60.3
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 1.7e-84 317.0 335 66.9
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 2.2e-84 316.6 326 60.1
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 6.4e-84 315.1 325 59.4
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 9.2e-83 311.2 303 61.7
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 1.6e-82 310.5 333 57.4
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 3.5e-82 309.3 308 61.4
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 4.6e-82 308.9 308 59.7
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.3e-81 307.4 337 61.1
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.7e-81 307.0 312 61.9
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 3.9e-81 305.8 312 61.9
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 5.1e-81 305.4 335 65.7
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 8.6e-81 304.7 323 56.3
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 1.5e-80 303.9 308 59.7
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 5.6e-80 302.0 312 66.3
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 7.3e-80 301.6 325 57.2
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 2.1e-79 300.1 322 57.5
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 2.1e-79 300.1 340 62.4
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 2.8e-79 299.7 326 56.1
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 4.7e-79 298.9 303 58.7
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 6.2e-79 298.5 324 64.5
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.4e-78 297.4 271 64.6
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.8e-78 297.0 316 59.5
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 1.8e-78 297.0 316 59.5
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 4.0e-78 295.8 326 65.6
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 6.8e-78 295.0 341 54.3
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 8.9e-78 294.7 336 58.9
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.5e-77 293.9 326 65.3
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 1.5e-77 293.9 342 53.5
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 3.4e-77 292.7 328 56.1
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 3.4e-77 292.7 325 55.4
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 1.3e-76 290.8 325 60.9
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 2.9e-76 289.7 326 56.7
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 2.9e-76 289.7 276 59.8
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 1.1e-75 287.7 312 61.5
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 3.2e-75 286.2 340 52.6
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 3.2e-75 286.2 502 48.4
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 9.2e-75 284.6 314 57.6
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.6e-74 283.9 326 67.2
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 1.3e-73 280.8 325 63.1
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 2.3e-73 280.0 348 58.6
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 3.9e-73 279.3 326 66.3
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 2.5e-72 276.6 350 52.9
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 5.6e-72 275.4 348 51.4
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 1.1e-70 271.2 304 54.6
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 1.4e-70 270.8 335 59.4
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 2.4e-70 270.0 353 58.9
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 3.1e-70 269.6 344 50.0
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 8.9e-70 268.1 357 57.7
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 2.0e-69 266.9 213 67.6
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 3.4e-69 266.2 339 50.7
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 9.9e-69 264.6 321 61.7
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 2.9e-68 263.1 358 52.2
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 6.4e-68 261.9 321 52.0
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 1.1e-67 261.2 323 52.3
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 2.4e-67 260.0 356 59.8
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 3.2e-67 259.6 333 61.9
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 7.1e-67 258.5 321 51.4
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 1.6e-66 257.3 355 53.8
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.5e-66 256.1 349 60.5
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 4.6e-66 255.8 295 53.2
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 6.0e-66 255.4 322 53.7
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 7.8e-66 255.0 344 50.9
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 1.3e-65 254.2 333 49.5
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 2.3e-65 253.4 292 61.6
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 3.9e-65 252.7 326 49.4
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 3.9e-65 252.7 315 55.2
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 8.7e-65 251.5 322 50.9
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 2.5e-64 250.0 322 49.7
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 4.3e-64 249.2 336 48.8
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 1.6e-63 247.3 323 50.2
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.6e-63 247.3 332 53.0
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 4.0e-62 242.7 338 51.5
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 9.0e-62 241.5 338 51.2
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 2.0e-61 240.4 196 67.3
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 2.6e-61 240.0 216 62.0
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.6e-61 240.0 320 51.9
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 4.5e-61 239.2 270 56.3
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 4.5e-61 239.2 338 48.5
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 4.5e-61 239.2 325 53.8
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 3.8e-60 236.1 349 47.0
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 1.1e-59 234.6 324 47.8
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.1e-59 234.6 275 56.4
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 1.1e-59 234.6 335 53.1
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 2.4e-59 233.4 285 60.7
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 2.4e-59 233.4 342 52.0
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 3.2e-59 233.0 311 48.2
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 3.2e-59 233.0 248 64.1
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 4.2e-59 232.6 353 45.0
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 1.6e-58 230.7 325 48.0
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 1.6e-58 230.7 173 72.8
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.6e-58 230.7 256 53.1
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 3.5e-58 229.6 338 44.7
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 1.0e-57 228.0 316 56.3
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 3.9e-57 226.1 380 44.7
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 3.9e-57 226.1 325 48.0
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 1.5e-56 224.2 251 53.0
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 2.8e-55 219.9 295 50.5
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 4.0e-54 216.1 213 57.7
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 9.0e-54 214.9 375 48.0
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.2e-53 214.5 287 51.2
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 4.5e-53 212.6 309 46.3
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 3.8e-52 209.5 263 51.7
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 3.5e-50 203.0 223 57.8
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 7.4e-48 195.3 154 69.5
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 3.4e-45 186.4 323 43.3
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.1e-43 181.4 311 43.4
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 1.4e-43 181.0 202 51.0
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 4.6e-42 176.0 323 42.1
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 8.7e-41 171.8 202 52.0
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 1.1e-40 171.4 112 79.5
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 1.9e-40 170.6 114 78.9
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 3.7e-39 166.4 212 51.4
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 3.2e-35 153.3 111 74.8
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 7.2e-35 152.1 194 47.9
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.1e-32 144.8 152 55.3
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 1.6e-31 141.0 116 69.8
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 6.3e-31 139.0 208 47.1
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 9.1e-30 135.2 324 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 2.2e-23 114.0 203 40.4
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 7.7e-21 105.5 105 57.1
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 5.0e-20 102.8 176 40.3
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 4.7e-18 96.3 68 73.5
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 1.1e-16 91.7 203 36.5
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 1.5e-16 91.3 82 59.8
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 1.1e-14 85.1 216 35.6
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 9.1e-14 82.0 89 53.9
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.3e-12 78.2 182 33.5
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.3e-12 78.2 182 33.5
QL03p064635 Quercus lobata HOM05D005155 ORTHO05D006266 1.2e-10 71.6 61 67.2
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 5.2e-09 66.2 104 40.4
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 8.8e-09 65.5 54 68.5
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 3.7e-07 60.1 159 36.5
unitig_749.g13565 Utricularia gibba HOM05D005155 ORTHO05D006266 4.1e-06 56.6 87 43.7


User provided reference genes

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