Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.4e-130 468.8 223 100.0
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 6.5e-96 354.4 189 91.0
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 4.2e-95 351.7 184 92.4
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.0e-93 347.1 188 89.4
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.9e-87 326.2 223 74.0
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 4.4e-84 315.1 219 74.0
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 4.4e-84 315.1 173 86.7
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 9.8e-84 313.9 178 83.1
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 2.2e-83 312.8 189 80.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 2.2e-83 312.8 215 74.0
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 2.8e-83 312.4 192 79.2
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 8.3e-83 310.8 189 79.9
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.8e-82 309.7 194 78.9
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 5.4e-82 308.1 188 81.4
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 1.2e-81 307.0 204 75.5
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 2.7e-81 305.8 186 79.6
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 3.5e-81 305.4 186 77.4
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 5.0e-80 301.6 184 77.7
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 8.5e-80 300.8 192 77.6
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.1e-79 300.4 176 77.8
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.1e-79 300.4 218 71.1
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.2e-79 298.9 202 74.8
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 4.2e-79 298.5 184 75.0
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 4.2e-79 298.5 168 83.9
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 7.2e-79 297.7 186 76.3
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 9.4e-79 297.4 190 75.8
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.2e-78 297.0 185 77.8
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.1e-78 296.2 205 73.7
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 2.1e-78 296.2 175 76.6
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 2.7e-78 295.8 186 77.4
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.6e-78 295.4 190 75.3
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 3.6e-78 295.4 180 77.2
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 4.7e-78 295.0 175 76.6
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 6.1e-78 294.7 190 71.1
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 8.0e-78 294.3 175 76.6
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.3e-77 292.7 186 77.4
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 3.0e-77 292.4 180 76.7
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 3.0e-77 292.4 186 77.4
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 4.0e-77 292.0 185 75.7
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 4.0e-77 292.0 187 76.5
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 4.0e-77 292.0 187 76.5
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 8.8e-77 290.8 186 76.3
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 8.8e-77 290.8 147 89.8
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.2e-76 290.4 233 66.1
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.5e-76 290.0 169 81.7
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.5e-76 290.0 184 73.4
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.5e-76 290.0 187 74.9
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.0e-76 289.7 183 76.5
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 2.6e-76 289.3 165 81.2
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.6e-76 289.3 186 76.3
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 4.4e-76 288.5 185 75.1
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 5.7e-76 288.1 225 67.1
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 1.3e-75 287.0 186 74.7
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.7e-75 286.6 147 89.1
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.7e-75 286.6 174 75.9
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 2.2e-75 286.2 146 87.7
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 3.7e-75 285.4 184 73.4
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 3.7e-75 285.4 185 76.2
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 4.9e-75 285.0 181 74.6
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 6.3e-75 284.6 184 73.4
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.1e-74 283.9 172 77.9
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 2.4e-74 282.7 191 71.7
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 2.4e-74 282.7 212 64.6
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 4.1e-74 282.0 181 71.8
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 4.1e-74 282.0 182 73.6
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 4.1e-74 282.0 184 72.8
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 4.1e-74 282.0 145 84.1
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 7.0e-74 281.2 184 73.4
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 9.2e-74 280.8 164 78.0
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.2e-73 280.4 182 73.1
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.2e-73 280.4 185 76.2
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 3.5e-73 278.9 184 72.3
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 5.9e-73 278.1 181 72.9
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 7.7e-73 277.7 156 81.4
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 7.7e-73 277.7 156 81.4
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 7.7e-73 277.7 181 72.9
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.0e-72 277.3 170 77.6
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 1.3e-72 276.9 182 75.3
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.9e-72 275.8 151 84.1
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 6.6e-72 274.6 146 84.2
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 8.6e-72 274.2 144 85.4
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.1e-71 273.9 160 82.5
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 3.3e-71 272.3 156 76.9
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 9.5e-71 270.8 162 82.1
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.0e-69 267.3 143 81.1
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 4.0e-69 265.4 144 80.6
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 7.5e-68 261.2 144 81.2
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.3e-67 260.4 152 75.7
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 2.4e-66 256.1 181 70.2
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 9.2e-66 254.2 176 71.0
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 7.8e-65 251.1 142 78.2
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.3e-64 250.4 174 70.7
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.3e-64 250.4 140 77.9
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.0e-64 249.2 150 81.3
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 6.6e-64 248.1 124 91.1
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 8.6e-64 247.7 142 73.2
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.3e-63 245.7 225 55.6
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 8.0e-62 241.1 127 83.5
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.4e-61 240.4 132 84.8
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 5.2e-61 238.4 172 66.9
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 8.9e-61 237.7 166 71.1
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.5e-60 236.9 160 70.6
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 9.8e-60 234.2 126 83.3
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 6.4e-59 231.5 119 85.7
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.6e-57 226.9 140 76.4
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.7e-56 223.4 148 75.0
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 2.5e-55 219.5 120 85.0
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.3e-55 219.2 140 67.9
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 2.6e-52 209.5 183 60.1
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 8.3e-51 204.5 117 81.2
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.5e-47 193.7 99 86.9
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 4.0e-45 185.7 150 67.3
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 4.1e-42 175.6 89 91.0
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.2e-41 174.1 88 89.8
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.3e-40 169.9 160 51.2
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.0e-40 169.5 140 54.3
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.1e-39 167.5 184 47.8
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 3.3e-39 166.0 116 67.2
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.3e-39 166.0 139 54.0
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.2e-38 164.1 140 55.7
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 4.0e-37 159.1 164 49.4
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.8e-35 152.5 152 46.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.2e-33 147.5 155 51.0
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 5.6e-31 138.7 85 72.9
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.3e-30 137.5 72 90.3
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.2e-28 131.0 70 88.6
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 8.4e-27 124.8 133 48.1
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.3e-24 116.7 222 37.8
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 3.0e-24 116.3 59 83.1
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 5.6e-23 112.1 120 46.7
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 2.6e-20 103.2 53 84.9
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 1.9e-18 97.1 122 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 4.3e-15 85.9 77 55.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.9e-10 70.5 176 29.0
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.5e-10 70.1 81 49.4
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 3.2e-10 69.7 31 90.3
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 3.9e-08 62.8 143 30.1
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.5e-07 60.8 94 35.1
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 5.7e-07 58.9 69 40.6
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 9.6e-07 58.2 154 28.6


User provided reference genes

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