Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 8.4e-147 523.9 300 100.0
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 8.1e-134 480.7 303 91.4
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 5.1e-96 355.1 306 67.3
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 1.5e-79 300.4 310 64.5
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 1.0e-72 277.7 303 59.7
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 6.8e-64 248.4 317 51.7
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 8.8e-64 248.1 317 51.7
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 7.0e-61 238.4 314 49.0
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 9.2e-61 238.0 314 48.7
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 2.7e-60 236.5 315 52.1
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 1.0e-59 234.6 309 49.8
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 1.9e-58 230.3 315 51.7
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.9e-58 230.3 315 51.7
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.5e-58 229.9 315 51.7
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 5.6e-58 228.8 320 49.4
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 7.3e-58 228.4 302 56.0
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 2.8e-57 226.5 305 48.2
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 1.4e-56 224.2 302 47.4
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 2.0e-55 220.3 311 49.5
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 4.4e-55 219.2 306 53.3
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 7.5e-55 218.4 311 46.6
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 9.8e-55 218.0 297 56.6
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 1.1e-53 214.5 303 55.1
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 9.2e-53 211.5 319 47.3
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 1.2e-52 211.1 317 53.0
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 3.0e-51 206.5 306 48.4
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.6e-51 205.3 292 48.3
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.6e-51 205.3 294 48.6
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 6.6e-51 205.3 294 48.6
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 6.6e-51 205.3 302 54.3
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 7.3e-50 201.8 314 47.8
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 1.2e-49 201.1 285 46.3
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 1.2e-49 201.1 317 45.4
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 2.8e-49 199.9 358 41.9
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 3.6e-49 199.5 339 42.5
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 2.3e-48 196.8 358 41.3
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 4.0e-48 196.1 301 46.8
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 2.9e-46 189.9 154 68.2
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 4.9e-46 189.1 308 43.2
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 2.4e-45 186.8 356 39.6
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 5.4e-45 185.7 283 48.4
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 3.5e-44 183.0 303 47.2
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 3.5e-44 183.0 290 42.4
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 3.5e-44 183.0 302 45.0
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 4.6e-44 182.6 283 47.7
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 1.0e-43 181.4 301 42.9
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 3.9e-43 179.5 290 44.1
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 2.5e-42 176.8 321 42.4
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 3.3e-42 176.4 330 44.2
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 3.6e-41 172.9 273 51.6
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 4.7e-41 172.6 290 41.7
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 1.1e-40 171.4 151 61.6
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 1.1e-40 171.4 283 43.8
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 3.1e-40 169.9 327 46.8
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 3.1e-40 169.9 324 44.8
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 8.9e-40 168.3 304 42.1
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 1.2e-39 167.9 316 41.5
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 1.2e-39 167.9 251 45.4
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 4.9e-38 162.5 307 41.0
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 1.2e-36 157.9 246 45.5
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 3.5e-36 156.4 241 45.6
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 6.0e-36 155.6 156 60.9
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 1.0e-35 154.8 293 43.3
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 6.6e-35 152.1 153 58.8
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 6.6e-35 152.1 299 36.8
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 1.1e-34 151.4 248 43.1
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 1.9e-34 150.6 255 43.9
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 7.3e-34 148.7 153 60.1
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 9.5e-34 148.3 149 57.0
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.2e-33 147.9 204 51.5
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 2.1e-33 147.1 311 41.5
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 2.8e-33 146.7 292 46.9
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 3.6e-33 146.4 227 52.9
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 6.2e-33 145.6 295 41.4
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 1.1e-32 144.8 300 41.0
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 1.4e-32 144.4 270 41.9
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 1.8e-32 144.1 302 41.7
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 2.3e-32 143.7 304 38.2
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 4.0e-32 142.9 309 38.8
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 4.0e-32 142.9 309 38.8
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 4.0e-32 142.9 309 38.8
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 1.2e-31 141.4 293 39.9
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 1.2e-31 141.4 320 41.6
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 3.4e-31 139.8 303 37.6
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 7.6e-31 138.7 131 61.8
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 1.3e-30 137.9 221 49.3
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 1.7e-30 137.5 302 44.7
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 2.9e-30 136.7 151 57.6
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 6.4e-30 135.6 296 43.9
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 1.4e-29 134.4 323 36.5
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 4.1e-29 132.9 151 57.0
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 7.1e-29 132.1 281 40.2
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 6.0e-28 129.0 217 46.5
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 5.1e-27 125.9 92 71.7
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 5.1e-27 125.9 317 41.3
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 1.1e-26 124.8 210 42.4
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.9e-26 124.0 147 55.8
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 9.6e-26 121.7 217 50.7
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 9.6e-26 121.7 267 41.9
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 9.6e-26 121.7 281 39.5
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 1.6e-25 120.9 171 47.4
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 2.8e-25 120.2 94 69.1
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 4.7e-25 119.4 316 37.0
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 4.0e-24 116.3 227 40.5
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 6.9e-24 115.5 168 46.4
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 8.9e-24 115.2 217 40.1
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 2.0e-23 114.0 265 36.6
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 3.4e-23 113.2 147 46.3
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 5.8e-23 112.5 247 45.3
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 2.2e-22 110.5 263 36.1
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 1.2e-20 104.8 276 34.1
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 2.1e-20 104.0 258 34.5
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 6.0e-20 102.4 77 71.4
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 6.0e-20 102.4 109 57.8
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 7.3e-18 95.5 197 37.1
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 1.1e-13 81.6 61 68.9
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.4e-13 81.3 51 78.4
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 3.5e-12 76.6 142 40.8
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.9e-10 70.9 41 82.9
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 7.6e-07 58.9 48 68.8


User provided reference genes

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