Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 4.7e-205 717.6 359 100.0
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 2.8e-189 665.2 402 85.1
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 1.3e-154 550.1 359 78.0
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 2.7e-144 515.8 361 74.0
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 3.2e-121 439.1 357 64.7
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 5.2e-119 431.8 360 64.2
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 1.2e-118 430.6 357 65.0
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 1.5e-118 430.3 378 60.8
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 2.2e-117 426.4 358 63.7
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 6.3e-117 424.9 266 77.4
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 4.1e-116 422.2 378 60.3
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 7.0e-116 421.4 357 64.1
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 4.5e-115 418.7 338 67.2
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 7.7e-115 417.9 356 64.0
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 1.3e-114 417.2 361 62.9
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 1.1e-113 414.1 360 62.2
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 1.1e-113 414.1 377 61.0
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.9e-113 413.3 345 62.6
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 4.2e-113 412.1 357 62.5
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 5.5e-113 411.8 359 61.8
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 1.6e-112 410.2 363 61.2
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 2.7e-112 409.5 358 63.4
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 6.1e-112 408.3 350 62.6
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 3.7e-109 399.1 362 60.5
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 4.8e-109 398.7 349 61.0
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 6.3e-109 398.3 368 59.5
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.4e-108 397.1 345 62.3
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.6e-107 393.7 338 60.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.0e-107 393.3 361 59.3
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 5.9e-107 391.7 348 60.9
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 5.9e-107 391.7 369 59.6
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.0e-106 391.0 338 60.7
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.3e-106 389.8 336 61.0
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 6.6e-106 388.3 367 58.3
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.1e-105 387.5 305 65.9
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 5.5e-105 385.2 359 58.8
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 7.2e-105 384.8 353 58.6
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 2.8e-104 382.9 360 57.5
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 5.2e-103 378.6 345 59.7
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 8.9e-103 377.9 360 57.5
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 2.2e-101 373.2 289 66.4
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 2.8e-101 372.9 362 58.3
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 6.3e-101 371.7 360 56.7
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 3.1e-100 369.4 360 56.7
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 3.1e-100 369.4 361 56.2
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 3.1e-100 369.4 365 55.6
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 1.6e-99 367.1 334 57.2
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 2.0e-99 366.7 354 54.8
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 2.0e-99 366.7 286 64.3
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 2.7e-99 366.3 296 64.9
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 4.5e-99 365.5 355 56.9
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 4.5e-99 365.5 342 59.9
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 7.8e-99 364.8 305 61.0
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 1.3e-98 364.0 329 59.6
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 3.9e-98 362.5 367 55.0
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 6.6e-98 361.7 382 53.9
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 1.1e-97 360.9 357 55.5
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 1.5e-97 360.5 303 63.0
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 4.3e-97 359.0 386 51.3
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 5.6e-97 358.6 396 52.5
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 1.0e-95 354.4 283 65.4
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 3.1e-95 352.8 337 55.2
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 5.2e-95 352.1 247 70.0
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 5.2e-95 352.1 310 60.6
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 9.8e-94 347.8 249 67.5
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 2.9e-93 346.3 264 67.4
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 3.7e-93 345.9 292 60.3
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 4.9e-93 345.5 237 70.0
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 6.4e-93 345.1 257 68.9
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 4.1e-92 342.4 313 58.1
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 1.6e-91 340.5 279 62.4
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 1.6e-91 340.5 237 68.8
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 2.0e-91 340.1 273 63.7
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 4.6e-91 339.0 341 55.4
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 1.0e-90 337.8 265 64.9
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 1.7e-90 337.0 275 65.1
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 3.9e-90 335.9 330 57.0
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 5.0e-90 335.5 219 72.6
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 1.1e-89 334.3 346 55.2
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 1.9e-89 333.6 237 68.8
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 2.5e-89 333.2 278 61.9
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 2.5e-89 333.2 239 69.5
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 4.3e-89 332.4 299 58.5
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 1.2e-88 330.9 239 69.0
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 2.1e-88 330.1 349 53.3
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 2.1e-88 330.1 313 56.2
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 2.1e-88 330.1 313 56.2
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 4.7e-88 328.9 356 52.8
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 6.2e-88 328.6 354 50.6
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 1.4e-87 327.4 301 57.8
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 2.3e-87 326.6 240 69.2
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 2.3e-87 326.6 240 69.2
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 5.2e-87 325.5 314 56.1
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 2.6e-86 323.2 270 61.9
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 2.6e-86 323.2 354 49.7
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 2.6e-86 323.2 263 65.0
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 9.8e-86 321.2 312 55.4
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 2.4e-84 316.6 220 71.8
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 3.2e-84 316.2 260 61.9
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 7.8e-83 311.6 231 67.5
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 1.3e-82 310.8 297 57.2
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 3.6e-80 302.8 205 72.2
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 8.1e-80 301.6 276 57.2
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 1.9e-76 290.4 197 74.6
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 1.3e-74 284.3 186 73.1
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 1.1e-71 274.6 287 54.7
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 2.1e-67 260.4 256 50.8
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 2.1e-67 260.4 255 51.0
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 4.0e-63 246.1 284 45.8
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 1.2e-62 244.6 150 80.0
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 5.8e-62 242.3 237 52.3
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 2.7e-51 206.8 174 55.2
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 3.5e-51 206.5 177 55.9
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 1.8e-50 204.1 121 78.5
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 2.3e-50 203.8 175 56.0
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 1.5e-49 201.1 173 56.1
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 8.1e-48 195.3 175 52.6
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 3.4e-46 189.9 103 86.4
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 1.4e-31 141.4 79 79.7
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 9.0e-31 138.7 69 91.3
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 2.8e-24 117.1 182 41.8
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 2.4e-15 87.4 58 67.2
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 1.4e-10 71.6 133 31.6
C08p20390 Brassica napus HOM05D005712 ORTHO05D032168 2.8e-08 63.9 139 33.8
Cpa.g.c35203 Carica papaya HOM05D005712 ORTHO05D007865 8.2e-08 62.4 67 52.2
BcaC07g39055 Brassica carinata HOM05D005712 ORTHO05D032168 1.1e-07 62.0 134 33.6
TAR188G0003 Trochodendron aralioides HOM05D005712 ORTHO05D007865 2.6e-06 57.4 112 35.7
Cpa.g.c30633.1 Carica papaya HOM05D005712 ORTHO05D120172 5.9e-06 56.2 56 57.1


User provided reference genes

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