Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 3.4e-97 358.2 168 100.0
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 3.0e-85 318.5 172 88.4
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.4e-82 309.7 168 84.5
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 1.3e-80 303.1 168 81.0
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 2.2e-80 302.4 167 82.0
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 2.2e-80 302.4 167 82.0
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 9.3e-79 297.0 168 79.8
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 2.3e-77 292.4 167 77.2
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 1.1e-76 290.0 168 79.2
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 1.1e-76 290.0 169 78.7
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.1e-74 283.5 168 76.2
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.1e-74 283.5 168 76.8
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 5.3e-74 281.2 170 74.7
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 5.3e-74 281.2 163 77.3
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 6.9e-74 280.8 168 74.4
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.5e-73 279.6 168 73.2
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 4.9e-72 274.6 168 71.4
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 6.5e-72 274.2 168 74.4
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 1.1e-71 273.5 168 70.8
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.2e-71 271.9 168 72.6
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 3.2e-71 271.9 168 69.6
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 4.2e-71 271.6 168 68.5
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 1.2e-70 270.0 170 71.2
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.6e-70 269.6 168 70.8
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 2.1e-70 269.2 168 71.4
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.7e-70 268.9 168 72.0
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.5e-70 268.5 168 68.5
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 3.5e-70 268.5 168 69.0
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 6.0e-70 267.7 168 69.0
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 6.0e-70 267.7 168 70.2
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 7.9e-70 267.3 168 67.9
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.9e-70 267.3 168 67.9
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.9e-70 267.3 168 67.9
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.0e-69 266.9 168 73.8
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.1e-68 263.5 168 67.9
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.3e-67 260.0 170 68.2
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.8e-67 258.8 168 67.9
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 3.7e-67 258.5 168 69.0
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 8.2e-67 257.3 168 66.7
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.8e-66 256.1 141 83.0
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 1.2e-65 253.4 179 61.5
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 3.4e-65 251.9 168 66.7
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 3.4e-65 251.9 205 60.5
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 5.9e-65 251.1 170 64.1
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.7e-64 249.6 170 63.5
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.2e-64 249.2 168 63.1
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 2.9e-64 248.8 168 67.3
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 2.9e-64 248.8 168 63.7
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 3.8e-64 248.4 168 66.7
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 5.0e-64 248.1 170 66.5
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.5e-64 247.7 168 63.7
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 8.4e-64 247.3 168 64.3
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 8.4e-64 247.3 168 66.7
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.4e-63 246.5 168 63.7
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 2.5e-63 245.7 168 61.3
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.2e-63 245.4 168 63.1
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 4.2e-63 245.0 168 63.1
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.2e-63 245.0 168 63.7
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 7.2e-63 244.2 152 72.4
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 9.3e-63 243.8 168 62.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.2e-62 243.4 168 62.5
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.6e-62 243.0 168 64.3
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.7e-62 242.3 168 63.1
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 3.5e-62 241.9 168 62.5
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 3.5e-62 241.9 168 63.1
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 61.9
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 63.1
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 61.9
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 3.5e-62 241.9 168 61.3
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 6.1e-62 241.1 168 62.5
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 1.0e-61 240.4 168 61.9
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.3e-61 240.0 168 61.9
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.3e-61 240.0 168 61.3
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 1.3e-61 240.0 168 61.3
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.3e-61 240.0 168 61.3
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 1.3e-61 240.0 168 61.3
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 3.0e-61 238.8 170 61.2
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 3.0e-61 238.8 168 61.3
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 5.1e-61 238.0 168 60.7
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 5.1e-61 238.0 169 63.9
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.9e-60 236.1 201 54.7
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 61.9
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 3.3e-60 235.3 205 55.1
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 5.7e-60 234.6 169 62.7
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 5.7e-60 234.6 169 62.7
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.6e-59 233.0 184 61.4
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 1.6e-59 233.0 237 52.3
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.2e-59 232.6 173 61.3
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 6.3e-59 231.1 168 59.5
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 8.2e-59 230.7 168 60.1
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.4e-58 229.9 168 60.1
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.4e-58 229.9 168 60.1
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 3.1e-58 228.8 168 60.7
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 6.9e-58 227.6 193 56.5
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 9.0e-58 227.3 168 60.7
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-57 226.5 169 60.4
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 4.5e-57 224.9 189 54.5
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 2.2e-56 222.6 196 52.6
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 3.8e-56 221.9 181 54.7
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 5.0e-56 221.5 169 60.9
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 5.0e-56 221.5 169 60.9
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 6.5e-56 221.1 172 57.6
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.1e-55 220.3 168 58.9
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.4e-55 219.9 168 57.7
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 7.2e-55 217.6 168 57.7
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 2.7e-54 215.7 154 59.1
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 4.6e-54 214.9 168 57.1
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 7.9e-54 214.2 188 52.7
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.4e-53 213.4 168 53.6
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 3.9e-53 211.8 188 52.7
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 2.0e-52 209.5 167 61.7
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.0e-52 209.5 137 67.2
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 4.3e-52 208.4 190 51.6
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 2.2e-51 206.1 140 68.6
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.5e-49 199.9 190 50.5
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.0e-48 197.2 169 53.8
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.2e-48 196.1 151 58.9
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 1.1e-47 193.7 168 56.5
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.7e-46 188.3 145 57.2
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.9e-46 187.6 125 61.6
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 4.4e-44 181.8 111 67.6
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 7.4e-44 181.0 125 72.0
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 9.1e-42 174.1 104 69.2
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 9.1e-42 174.1 169 47.9
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.6e-41 173.3 173 48.6
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.3e-40 170.2 169 46.7
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.1e-39 167.2 174 47.7
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 1.5e-39 166.8 168 51.2
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 3.2e-39 165.6 186 46.2
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 4.0e-37 158.7 168 47.6
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 3.5e-33 145.6 97 70.1
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 1.3e-32 143.7 90 70.0
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.9e-31 139.8 171 43.3
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 7.2e-31 137.9 162 45.7
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 2.6e-28 129.4 169 38.5
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.5e-28 127.9 142 42.3
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.7e-27 126.7 107 52.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.8e-27 125.9 184 37.0
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.4e-26 123.6 163 39.3
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 1.2e-25 120.6 169 35.5
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.9e-23 113.2 171 37.4
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 5.5e-23 111.7 86 65.1
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.2e-20 104.0 92 48.9
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 2.7e-17 92.8 69 59.4
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.6e-14 82.4 60 56.7
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 9.5e-07 57.8 141 28.4


User provided reference genes

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