Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014115 Carpinus fangiana HOM05D003293 ORTHO05D022248 8.4e-38 159.8 80 100.0
Cfa011750 Carpinus fangiana HOM05D003293 ORTHO05D022248 1.6e-28 129.0 79 82.3
Cfa005199 Carpinus fangiana HOM05D003293 ORTHO05D022248 4.6e-28 127.5 77 84.4
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.4e-27 125.9 72 87.5
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.8e-27 125.6 79 84.8
Cfa011413 Carpinus fangiana HOM05D003293 ORTHO05D022248 3.3e-26 121.3 72 83.3
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 1.5e-18 95.9 72 65.3
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 2.4e-16 88.6 73 60.3
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 7.0e-16 87.0 74 56.8
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.2e-15 86.3 72 55.6
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.2e-15 86.3 73 58.9
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 1.2e-15 86.3 72 56.9
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 1.6e-15 85.9 73 58.9
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 1.6e-15 85.9 73 60.3
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 2.0e-15 85.5 72 56.9
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 3.5e-15 84.7 72 55.6
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 4.5e-15 84.3 73 56.2
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.3e-14 82.8 72 54.2
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 1.7e-14 82.4 72 55.6
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 2.2e-14 82.0 72 56.9
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 2.9e-14 81.6 72 55.6
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 3.8e-14 81.3 72 54.2
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 3.8e-14 81.3 79 51.9
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 3.8e-14 81.3 79 51.9
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 3.8e-14 81.3 79 51.9
RcHm_v2.0_Chr5g0023571 Rosa chinensis HOM05D003293 ORTHO05D022248 3.8e-14 81.3 72 54.2
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 6.5e-14 80.5 72 55.6
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 8.5e-14 80.1 72 54.2
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 8.5e-14 80.1 74 54.1
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 8.5e-14 80.1 72 52.8
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.1e-13 79.7 74 54.1
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.5e-13 79.3 72 52.8
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 1.5e-13 79.3 72 51.4
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 1.5e-13 79.3 79 50.6
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 1.5e-13 79.3 76 53.9
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 2.5e-13 78.6 72 51.4
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 2.5e-13 78.6 72 52.8
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 2.5e-13 78.6 72 54.2
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 2.5e-13 78.6 79 50.6
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 3.2e-13 78.2 72 51.4
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 4.2e-13 77.8 79 50.6
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 4.2e-13 77.8 72 51.4
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 5.5e-13 77.4 74 52.7
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 5.5e-13 77.4 74 51.4
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 5.5e-13 77.4 74 52.7
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 5.5e-13 77.4 72 54.2
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 7.2e-13 77.0 72 51.4
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 9.4e-13 76.6 72 50.0
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 1.2e-12 76.3 79 48.1
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.6e-12 75.9 74 54.1
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.6e-12 75.9 74 54.1
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.6e-12 75.9 74 54.1
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 2.7e-12 75.1 72 51.4
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 3.6e-12 74.7 72 50.0
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 3.6e-12 74.7 72 47.2
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 4.7e-12 74.3 72 45.8
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 4.7e-12 74.3 72 48.6
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 6.1e-12 73.9 72 48.6
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 6.1e-12 73.9 72 47.2
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 6.1e-12 73.9 72 45.8
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.0e-11 73.2 74 52.7
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 1.0e-11 73.2 74 50.0
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 1.0e-11 73.2 72 50.0
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 1.0e-11 73.2 72 48.6
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 1.4e-11 72.8 72 44.4
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.4e-11 72.8 72 44.4
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 2.3e-11 72.0 72 48.6
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 2.3e-11 72.0 72 48.6
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 4.0e-11 71.2 72 45.8
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 6.7e-11 70.5 72 50.0
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 6.7e-11 70.5 72 50.0
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 6.7e-11 70.5 80 46.2
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 8.8e-11 70.1 73 49.3
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 8.8e-11 70.1 74 48.6
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 1.1e-10 69.7 72 45.8
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 1.1e-10 69.7 72 47.2
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.5e-10 69.3 73 43.8
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 1.5e-10 69.3 72 47.2
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 1.5e-10 69.3 72 47.2
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 2.0e-10 68.9 72 48.6
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 2.0e-10 68.9 73 49.3
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 2.6e-10 68.6 72 45.8
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 2.6e-10 68.6 72 45.8
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 2.6e-10 68.6 72 45.8
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 3.3e-10 68.2 72 45.8
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 3.3e-10 68.2 72 48.6
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 3.3e-10 68.2 72 47.2
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 4.4e-10 67.8 72 48.6
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 5.7e-10 67.4 72 44.4
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 7.5e-10 67.0 72 45.8
QL08p009748 Quercus lobata HOM05D003293 ORTHO05D022248 7.5e-10 67.0 76 51.3
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 9.7e-10 66.6 72 48.6
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 1.3e-09 66.2 72 45.8
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 1.3e-09 66.2 72 45.8
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 1.3e-09 66.2 72 45.8
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 1.3e-09 66.2 62 48.4
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 6.3e-09 63.9 72 44.4
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 6.3e-09 63.9 72 45.8
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 6.3e-09 63.9 72 44.4
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 8.2e-09 63.5 72 43.1
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 8.2e-09 63.5 72 47.2
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 8.2e-09 63.5 72 45.8
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 8.2e-09 63.5 72 47.2
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 1.1e-08 63.2 72 43.1
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 1.4e-08 62.8 72 44.4
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.4e-08 62.8 72 43.1
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 1.4e-08 62.8 72 43.1
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 1.8e-08 62.4 74 43.2
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 2.4e-08 62.0 72 44.4
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 2.4e-08 62.0 72 43.1
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 7.0e-08 60.5 72 45.8
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 9.1e-08 60.1 73 43.8
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 2.0e-07 58.9 72 40.3
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 2.0e-07 58.9 72 44.4
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 3.5e-07 58.2 72 40.3
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 4.5e-07 57.8 72 41.7
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 4.5e-07 57.8 72 40.3
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.3e-06 56.2 73 41.1
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.3e-06 56.2 72 44.4
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 2.2e-06 55.5 65 49.2
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 2.9e-06 55.1 65 49.2
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 2.9e-06 55.1 65 49.2
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 2.9e-06 55.1 65 49.2
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 2.9e-06 55.1 65 49.2
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 2.9e-06 55.1 65 49.2
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 2.9e-06 55.1 73 43.8
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 2.9e-06 55.1 73 42.5
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.8e-06 54.7 72 43.1
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 3.8e-06 54.7 73 45.2
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 5.0e-06 54.3 72 40.3
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 6.5e-06 53.9 72 38.9
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 8.5e-06 53.5 73 43.8
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 8.5e-06 53.5 72 40.3
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 8.5e-06 53.5 74 41.9
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 8.5e-06 53.5 72 40.3


User provided reference genes

Program Settings