Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 1.1e-248 862.8 439 100.0
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.3e-220 769.6 396 98.0
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 2.7e-202 708.8 399 88.2
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 3.9e-193 678.3 396 85.4
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 5.3e-182 641.3 398 78.6
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 4.9e-180 634.8 391 80.6
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 6.0e-178 627.9 396 77.8
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 1.7e-177 626.3 396 77.3
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 3.9e-177 625.2 394 78.2
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.1e-176 623.6 395 75.4
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 4.3e-176 621.7 426 72.8
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 3.6e-175 618.6 397 76.8
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 4.5e-173 611.7 395 73.4
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 5.8e-173 611.3 423 73.8
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 9.9e-173 610.5 395 72.7
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 9.9e-173 610.5 401 73.8
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 6.4e-172 607.8 392 77.0
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 8.4e-172 607.4 404 77.0
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.1e-171 607.1 389 73.8
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.4e-171 606.7 398 74.9
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.9e-171 606.3 389 73.8
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 4.6e-170 601.7 390 76.9
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.8e-169 599.7 394 76.4
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.9e-168 596.3 393 73.8
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 5.6e-168 594.7 387 73.4
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 9.6e-168 594.0 403 72.7
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 9.6e-168 594.0 392 74.2
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 2.1e-167 592.8 392 73.7
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 6.2e-167 591.3 385 72.7
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 1.1e-166 590.5 392 73.5
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.4e-166 590.1 415 69.9
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.8e-166 589.7 387 73.1
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 3.1e-166 589.0 388 74.7
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.2e-165 587.0 393 72.5
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 2.6e-165 585.9 388 72.7
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.4e-165 585.5 415 69.2
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 3.4e-165 585.5 391 74.4
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.5e-165 585.1 415 69.2
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 5.8e-165 584.7 385 72.7
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.3e-164 583.6 354 81.6
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.7e-164 583.2 390 73.6
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 3.8e-164 582.0 399 71.4
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.1e-163 580.5 392 72.7
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 5.5e-163 578.2 392 72.7
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 6.0e-162 574.7 392 73.7
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 2.1e-159 566.2 388 71.6
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 4.8e-159 565.1 399 70.2
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 8.2e-159 564.3 391 70.8
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 2.4e-158 562.8 385 70.4
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 3.1e-158 562.4 392 71.2
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.9e-158 561.2 390 70.8
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 6.9e-158 561.2 388 70.9
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 1.5e-157 560.1 385 70.1
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.5e-157 560.1 385 69.9
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 1.3e-156 557.0 389 70.4
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 1.3e-156 557.0 389 70.4
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.9e-156 555.8 389 71.0
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 4.9e-156 555.1 389 70.2
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 6.5e-156 554.7 389 70.2
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.4e-156 554.3 413 67.3
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 2.5e-155 552.7 390 68.2
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 1.2e-154 550.4 389 69.9
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.2e-154 550.4 391 68.3
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 3.5e-154 548.9 389 69.7
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.6e-154 548.5 415 66.0
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 6.1e-154 548.1 390 69.5
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 3.9e-153 545.4 387 68.2
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 6.7e-153 544.7 416 65.1
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 3.3e-152 542.3 385 67.8
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 7.4e-152 541.2 351 76.4
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 2.4e-150 536.2 394 67.5
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 6.9e-150 534.6 383 68.1
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 6.5e-148 528.1 396 67.9
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 2.5e-147 526.2 382 67.3
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 7.2e-147 524.6 391 68.0
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 4.6e-146 521.9 400 66.2
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 4.6e-146 521.9 385 65.7
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 4.3e-144 515.4 404 68.1
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 2.4e-142 509.6 412 63.6
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 1.2e-141 507.3 406 64.0
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 7.7e-141 504.6 408 64.0
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 3.8e-140 502.3 380 67.1
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 8.5e-140 501.1 343 75.5
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 3.2e-139 499.2 394 65.2
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 2.7e-138 496.1 341 73.0
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 7.9e-138 494.6 399 64.7
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.4e-137 493.8 356 68.5
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 1.5e-136 490.3 393 64.1
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 2.0e-136 490.0 399 62.7
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 2.8e-135 486.1 399 62.4
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 2.8e-135 486.1 399 62.4
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 4.8e-135 485.3 393 62.6
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 9.1e-134 481.1 399 61.9
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 7.2e-131 471.5 399 60.9
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.1e-126 457.6 446 55.2
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.6e-114 417.2 342 62.3
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 4.7e-114 415.6 381 57.0
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 3.0e-113 412.9 391 55.0
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 6.8e-113 411.8 381 56.7
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 8.8e-113 411.4 315 65.7
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 4.5e-109 399.1 407 51.8
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.9e-108 396.4 411 50.4
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 3.0e-92 343.2 249 69.1
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.3e-91 339.7 219 74.4
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.3e-75 285.4 192 71.9
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 5.8e-72 275.8 377 41.4
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 7.8e-69 265.4 248 60.9
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 3.0e-60 236.9 178 69.1
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 5.1e-44 183.0 210 48.6
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 4.1e-41 173.3 315 34.6
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 6.7e-28 129.4 112 58.0
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 1.1e-27 128.6 106 57.5
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.5e-22 109.8 96 60.4
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 6.1e-21 106.3 89 57.3
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.8e-20 104.8 232 31.9
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 1.1e-17 95.5 323 22.6
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 4.1e-17 93.6 204 27.0
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 4.1e-17 93.6 204 27.0
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 2.3e-12 77.8 92 52.2
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.5e-11 75.1 136 29.4
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 2.0e-11 74.7 124 30.6
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 2.6e-11 74.3 124 30.6
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 7.5e-11 72.8 121 29.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 9.7e-11 72.4 124 29.8
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.1e-09 68.9 117 29.1
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.4e-09 68.6 116 31.0
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 1.4e-09 68.6 179 29.1
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.2e-08 65.5 101 33.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 3.5e-08 63.9 118 28.0
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 3.5e-08 63.9 118 28.0
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 3.8e-07 60.5 124 26.6
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 3.8e-07 60.5 114 28.9
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 5.0e-07 60.1 91 31.9
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 5.0e-07 60.1 152 27.0
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 5.0e-07 60.1 152 27.0
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 5.0e-07 60.1 35 85.7
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 6.5e-07 59.7 157 28.0
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 6.5e-07 59.7 165 29.7
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 8.5e-07 59.3 165 23.6
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 1.1e-06 58.9 152 27.6
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 1.5e-06 58.5 155 27.7
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 1.5e-06 58.5 242 23.6
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.5e-06 58.5 158 26.6
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.5e-06 58.5 158 26.6
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 1.9e-06 58.2 124 26.6
Lj2A685T11 Lonicera japonica HOM05D005862 ORTHO05D007731 1.9e-06 58.2 150 26.0
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.9e-06 58.2 259 22.8
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 2.5e-06 57.8 127 26.0
Peaxi162Scf01124g10012 Petunia axillaris HOM05D003056 ORTHO05D003422 3.2e-06 57.4 167 26.9
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 5.5e-06 56.6 168 26.2
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 5.5e-06 56.6 110 30.0
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 5.5e-06 56.6 137 27.7
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 5.5e-06 56.6 137 27.7
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 5.5e-06 56.6 127 26.8
Solyc07g017760.1 Solanum lycopersicum HOM05D003056 ORTHO05D003422 5.5e-06 56.6 167 25.7
Sopen07g006580 Solanum pennellii HOM05D003056 ORTHO05D003422 5.5e-06 56.6 167 25.7
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 5.5e-06 56.6 160 26.9
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 7.2e-06 56.2 114 28.9
CAN.G206.197 Capsicum annuum HOM05D003056 ORTHO05D003422 7.2e-06 56.2 167 24.6
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 7.2e-06 56.2 133 25.6


User provided reference genes

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