Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.8e-163 578.6 292 100.0
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 4.5e-137 491.5 263 94.7
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 6.5e-104 381.3 260 77.3
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.2e-81 307.4 261 64.4
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.7e-57 226.5 285 49.1
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.4e-53 214.2 278 49.3
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.9e-48 196.1 286 44.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 2.5e-47 193.4 297 40.7
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.1e-45 188.0 298 41.9
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.3e-43 181.0 283 42.0
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.9e-43 179.9 297 41.4
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.1e-42 177.9 293 43.0
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.1e-42 175.3 287 45.6
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.2e-41 174.5 286 41.3
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 3.3e-39 166.4 300 39.0
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.6e-38 164.1 288 39.9
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 8.1e-38 161.8 296 39.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 5.3e-37 159.1 300 38.7
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 9.0e-37 158.3 284 41.9
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 9.0e-37 158.3 300 38.7
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.5e-36 157.5 287 40.4
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.7e-35 154.1 296 37.8
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-35 154.1 267 39.7
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.2e-34 149.8 181 50.8
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.1e-34 148.7 268 38.4
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.6e-33 147.5 249 41.0
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.6e-33 146.0 270 42.6
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 7.9e-33 145.2 270 38.5
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.3e-32 144.4 277 39.0
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.3e-32 144.4 267 38.6
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.1e-31 141.4 276 38.4
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 9.6e-31 138.3 303 36.3
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 9.6e-31 138.3 272 39.7
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.6e-30 137.5 246 40.2
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.6e-30 137.5 292 36.3
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 2.1e-30 137.1 264 39.0
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.1e-30 137.1 278 37.8
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.8e-30 136.7 261 38.3
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.1e-29 134.8 288 37.5
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.8e-29 134.0 295 39.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 3.1e-29 133.3 258 39.1
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 5.3e-29 132.5 279 36.6
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 6.9e-29 132.1 261 37.5
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 9.0e-29 131.7 258 39.9
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 4.5e-28 129.4 263 39.2
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 4.5e-28 129.4 263 38.8
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.9e-28 128.3 275 37.1
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.3e-27 127.9 261 37.2
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.3e-27 127.9 270 36.3
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.7e-27 127.5 262 37.0
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 3.8e-27 126.3 256 36.3
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.8e-27 126.3 278 36.0
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.8e-27 126.3 263 37.3
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 4.9e-27 125.9 256 37.1
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.9e-27 125.9 262 36.3
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.9e-27 125.9 262 36.3
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 6.4e-27 125.6 263 38.4
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 6.4e-27 125.6 272 36.4
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 6.4e-27 125.6 281 35.2
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 3.2e-26 123.2 271 35.4
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.6e-25 119.4 262 37.4
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.6e-25 119.4 252 36.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.6e-25 119.4 268 37.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 6.0e-25 119.0 269 36.1
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 7.9e-25 118.6 264 36.4
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.0e-24 118.2 262 37.0
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 3.0e-24 116.7 137 52.6
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.1e-23 114.8 261 34.9
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.9e-23 114.0 275 34.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.3e-23 113.2 268 34.3
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.3e-23 113.2 124 53.2
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 4.3e-23 112.8 264 36.0
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 7.4e-23 112.1 276 34.8
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 9.6e-23 111.7 257 34.2
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.6e-22 110.9 275 34.5
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.6e-22 110.9 268 35.8
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 2.1e-22 110.5 266 33.1
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.8e-22 110.2 277 35.0
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.7e-22 109.8 273 35.5
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 4.8e-22 109.4 287 32.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.1e-21 108.2 246 35.4
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.8e-21 107.5 279 34.8
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.4e-21 107.1 255 36.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 3.1e-21 106.7 255 36.1
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 3.1e-21 106.7 263 35.0
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.5e-20 104.4 258 33.7
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.0e-20 104.0 250 36.4
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.6e-20 103.6 263 34.6
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.4e-20 103.2 264 34.8
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.3e-19 101.3 273 32.2
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 3.8e-19 99.8 299 33.8
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.4e-18 97.8 257 32.7
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.2e-18 96.3 298 33.2
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 5.5e-18 95.9 250 34.8
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 7.9e-17 92.0 268 31.3
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 7.9e-17 92.0 250 34.4
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-15 88.2 256 34.8
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.1e-15 88.2 288 29.5
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.1e-15 88.2 290 29.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.5e-15 87.8 256 30.9
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 9.7e-15 85.1 262 32.8
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 2.1e-14 84.0 273 31.1
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.8e-14 82.8 279 30.8
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.1e-13 81.6 277 31.0
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.4e-13 81.3 303 29.0
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.8e-13 80.9 271 31.0
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.4e-13 80.5 206 36.4
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-12 78.2 251 33.9
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-12 77.8 212 35.8
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.5e-12 77.8 128 41.4
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 4.5e-12 76.3 286 27.6
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 7.6e-12 75.5 89 48.3
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.0e-11 75.1 120 39.2
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.3e-11 74.7 229 28.8
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.3e-11 74.7 240 30.4
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.7e-11 74.3 247 30.4
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.9e-11 73.6 254 28.3
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.9e-11 73.6 112 43.8
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 8.5e-11 72.0 131 40.5
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.4e-10 71.2 210 30.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.2e-10 69.7 246 31.7
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.2e-10 68.9 130 40.8
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.2e-09 68.2 73 47.9
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.6e-09 67.8 131 43.5
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.6e-09 67.8 239 28.5
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.1e-09 67.4 131 42.7
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.1e-09 67.4 130 40.0
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.1e-09 67.4 131 42.7
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.7e-09 67.0 214 30.4
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 6.1e-09 65.9 222 30.2
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 7.9e-09 65.5 141 35.5
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.3e-08 64.7 55 60.0
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 2.3e-08 63.9 244 29.5
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 3.9e-08 63.2 249 28.5
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.1e-08 62.8 82 39.0
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 6.7e-08 62.4 263 28.9
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.1e-07 61.6 155 34.2
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.1e-07 61.6 84 45.2
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 4.3e-07 59.7 52 57.7
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.7e-07 59.3 257 29.6
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.3e-06 58.2 70 47.1
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 1.3e-06 58.2 147 33.3
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.3e-06 58.2 87 40.2
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 1.6e-06 57.8 68 44.1
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.6e-06 57.8 264 26.9
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.2e-06 57.4 68 44.1
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 3.7e-06 56.6 70 45.7
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 4.8e-06 56.2 203 33.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 8.2e-06 55.5 179 33.5


User provided reference genes

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