Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1610.5 782 100.0
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1481.5 887 84.3
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1401.0 806 84.2
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1377.8 804 83.5
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1304.7 806 78.4
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1281.5 806 76.1
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1271.5 807 76.6
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1263.8 801 76.0
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1262.7 807 76.1
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1258.0 806 76.2
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1250.0 806 74.9
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1248.8 805 74.7
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1246.1 807 75.7
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1244.2 812 73.9
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1238.8 809 74.8
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1235.3 804 74.4
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1225.3 807 73.6
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1223.8 840 71.5
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1213.7 823 71.8
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1212.6 815 73.1
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1212.2 804 73.3
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1212.2 807 72.0
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1211.8 806 72.7
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1211.4 820 73.3
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1203.7 806 72.1
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1202.2 806 73.2
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1201.8 803 72.9
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1199.1 843 69.3
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1190.6 806 71.8
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1181.0 806 72.1
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1177.5 806 72.0
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1170.6 806 71.3
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1167.5 804 69.9
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1166.4 806 69.5
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1160.6 806 69.5
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1157.1 806 71.2
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1152.5 805 68.0
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1151.0 800 70.1
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1150.2 801 70.4
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1140.6 801 69.7
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1137.5 772 71.1
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1137.1 803 67.5
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1135.6 805 69.3
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1134.8 800 69.0
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1130.9 807 68.0
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1130.5 807 68.3
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1123.2 856 65.1
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1123.2 806 68.1
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1122.5 758 71.5
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1118.2 807 68.2
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1117.1 808 67.5
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1116.7 784 70.0
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1113.6 839 64.7
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1110.9 809 68.1
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1110.9 809 68.1
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1110.9 817 66.0
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1110.1 808 67.7
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1108.2 807 67.5
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1105.1 807 67.9
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1102.0 804 67.4
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1100.5 800 68.0
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1097.8 803 68.0
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1093.2 810 65.7
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1091.3 806 65.4
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1089.3 810 65.4
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1085.1 805 64.6
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1083.6 806 65.6
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1080.5 849 62.0
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 0.0e+00 1077.4 712 74.3
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1075.1 809 65.6
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 5.3e-312 1074.3 808 65.7
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 3.1e-310 1068.1 810 64.4
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 1.6e-306 1055.8 809 63.7
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 1.2e-301 1039.6 810 62.8
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 1.5e-301 1039.3 810 63.0
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 5.0e-300 1034.2 807 63.8
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 2.5e-299 1031.9 807 64.1
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 2.7e-298 1028.5 712 71.9
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 1.0e-297 1026.5 806 63.6
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 6.9e-294 1013.8 792 62.9
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 9.1e-294 1013.4 850 60.6
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 3.8e-292 1008.1 858 60.3
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 3.3e-288 995.0 707 69.9
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 3.1e-286 988.4 804 59.3
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 2.0e-285 985.7 805 59.9
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 2.0e-285 985.7 806 58.8
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 2.0e-280 969.1 808 61.0
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 5.5e-275 951.0 612 75.0
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 2.2e-263 912.5 603 74.3
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.3e-244 850.1 598 70.2
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 3.3e-235 818.9 609 67.8
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 6.2e-234 814.7 804 52.0
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 5.4e-214 748.4 615 58.7
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 2.1e-202 709.9 826 45.8
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.7e-191 673.7 829 45.8
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 8.2e-186 654.8 830 43.6
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 2.0e-184 650.2 461 69.0
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.3e-178 630.9 530 59.1
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.5e-176 622.5 458 66.6
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 3.0e-156 556.6 339 85.3
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 2.2e-154 550.4 372 72.8
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 3.5e-144 516.5 458 55.5
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 5.6e-134 482.6 587 44.3
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.0e-132 478.4 377 65.5
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 2.6e-131 473.8 447 53.2
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 5.0e-127 459.5 467 51.0
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.1e-113 413.3 312 63.1
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.4e-89 334.3 306 59.8
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 1.2e-83 315.5 235 69.4
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.3e-79 302.0 262 57.3
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 8.7e-79 299.3 193 70.5
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 2.2e-74 284.6 496 36.9
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 3.0e-55 221.1 146 69.9
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 2.6e-54 218.0 149 69.8
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.1e-44 186.0 197 51.8
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 2.1e-40 171.8 195 42.6
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 3.6e-40 171.0 123 62.6
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 2.2e-34 151.8 147 49.0
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 5.5e-33 147.1 840 22.7
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 1.8e-31 142.1 92 68.5
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.4e-28 131.7 72 76.4
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 4.0e-23 114.4 54 87.0
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.4e-22 110.9 196 37.2
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 2.6e-14 85.1 80 47.5
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 1.6e-08 65.9 126 38.1
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 3.6e-08 64.7 164 30.5
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 6.2e-08 63.9 52 57.7
Os06g0251200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.1e-07 61.6 148 30.4
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 5.2e-07 60.8 154 28.6
Hma1.2p1_0026F.1_g016300 Hydrangea macrophylla HOM05D000563 ORTHO05D000536 1.2e-06 59.7 230 26.5
Zm00001eb174850 Zea mays HOM05D000563 ORTHO05D000536 1.2e-06 59.7 142 26.8
PSO384G4100 Papaver somniferum HOM05D000563 ORTHO05D000536 1.5e-06 59.3 163 29.4
Atru.chr5.607 Acer truncatum HOM05D001597 ORTHO05D001512 2.6e-06 58.5 221 28.1
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.6e-06 58.5 141 26.2
ClCG03G014380 Citrullus lanatus HOM05D000563 ORTHO05D000536 3.4e-06 58.2 147 28.6
Migut.F00745 Erythranthe guttata HOM05D000563 ORTHO05D000536 3.4e-06 58.2 162 32.7
PSO724G1239 Papaver somniferum HOM05D000563 ORTHO05D000536 3.4e-06 58.2 133 32.3
Os04g0625600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.4e-06 57.8 150 28.0
HanXRQChr13g0418871 Helianthus annuus HOM05D000563 ORTHO05D000536 5.8e-06 57.4 134 29.9
PSO063G2838 Papaver somniferum HOM05D000563 ORTHO05D000536 7.5e-06 57.0 223 27.8
Sed0005870 Sechium edule HOM05D001597 ORTHO05D001512 7.5e-06 57.0 220 27.3
TWI23G0153 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 7.5e-06 57.0 138 29.0
SGA_v2.0_scaffold2G01048 Striga asiatica HOM05D000563 ORTHO05D000536 9.8e-06 56.6 125 36.0
TWI23G0118 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 9.8e-06 56.6 220 28.2


User provided reference genes

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