Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.4e-99 366.3 183 100.0
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 4.1e-80 301.6 167 91.0
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 4.1e-80 301.6 167 91.0
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 5.4e-80 301.2 167 90.4
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 8.6e-78 293.9 167 89.2
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 8.6e-78 293.9 163 88.3
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 1.2e-76 290.0 166 84.9
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 2.8e-76 288.9 167 85.0
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 2.8e-76 288.9 164 87.8
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 2.8e-76 288.9 165 86.7
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 2.8e-76 288.9 166 85.5
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 2.8e-76 288.9 165 85.5
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 2.8e-76 288.9 165 84.2
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 3.6e-76 288.5 173 82.7
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 4.7e-76 288.1 165 85.5
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 1.0e-75 287.0 167 84.4
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 1.4e-75 286.6 165 83.6
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.8e-75 286.2 167 84.4
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 1.8e-75 286.2 165 84.8
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 2.3e-75 285.8 165 83.6
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.0e-75 285.4 164 86.0
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 4.0e-75 285.0 167 83.8
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 5.2e-75 284.6 164 85.4
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 6.8e-75 284.3 167 83.8
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 6.8e-75 284.3 165 83.0
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 6.8e-75 284.3 165 83.0
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 8.9e-75 283.9 165 83.0
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 1.2e-74 283.5 165 84.2
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 1.2e-74 283.5 165 83.6
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 1.2e-74 283.5 166 81.9
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 1.2e-74 283.5 171 80.7
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 1.5e-74 283.1 165 83.6
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 1.5e-74 283.1 165 83.6
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 1.5e-74 283.1 165 82.4
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.5e-74 283.1 164 84.8
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 1.5e-74 283.1 165 84.8
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 2.0e-74 282.7 167 83.8
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 2.0e-74 282.7 165 83.0
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 2.0e-74 282.7 168 83.9
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 2.6e-74 282.3 163 84.0
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 2.6e-74 282.3 165 81.8
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 3.4e-74 282.0 164 83.5
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 3.4e-74 282.0 164 83.5
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 3.4e-74 282.0 164 83.5
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 3.4e-74 282.0 164 83.5
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 3.4e-74 282.0 164 83.5
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 3.4e-74 282.0 165 84.2
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 3.4e-74 282.0 165 83.6
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 4.4e-74 281.6 162 85.8
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 4.4e-74 281.6 165 83.0
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 4.4e-74 281.6 165 81.2
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 4.4e-74 281.6 165 83.0
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 4.4e-74 281.6 165 81.8
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 5.8e-74 281.2 164 83.5
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 5.8e-74 281.2 169 83.4
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 5.8e-74 281.2 164 83.5
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.8e-74 281.2 165 83.0
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 7.5e-74 280.8 165 80.6
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 7.5e-74 280.8 167 82.6
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 7.5e-74 280.8 167 82.6
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 7.5e-74 280.8 167 82.6
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 7.5e-74 280.8 165 83.0
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 9.8e-74 280.4 165 83.0
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 1.3e-73 280.0 165 80.6
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 1.3e-73 280.0 165 82.4
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 1.3e-73 280.0 165 81.8
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 1.7e-73 279.6 165 81.2
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 1.7e-73 279.6 165 81.2
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 2.2e-73 279.3 165 80.6
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 2.2e-73 279.3 164 82.9
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 2.9e-73 278.9 165 81.8
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 2.9e-73 278.9 165 81.8
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 2.9e-73 278.9 165 82.4
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 2.9e-73 278.9 165 81.2
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 2.9e-73 278.9 165 80.6
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 2.9e-73 278.9 162 84.0
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 3.7e-73 278.5 165 82.4
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 3.7e-73 278.5 165 81.8
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.7e-73 278.5 164 82.9
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 4.9e-73 278.1 165 81.8
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 4.9e-73 278.1 164 83.5
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 4.9e-73 278.1 165 81.8
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 4.9e-73 278.1 162 84.0
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 6.4e-73 277.7 165 81.8
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 6.4e-73 277.7 165 79.4
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 6.4e-73 277.7 163 82.8
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 8.3e-73 277.3 165 80.0
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 8.3e-73 277.3 163 83.4
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 8.3e-73 277.3 164 82.9
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 8.3e-73 277.3 163 84.0
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 1.8e-72 276.2 165 81.2
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 1.8e-72 276.2 163 82.2
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 1.8e-72 276.2 165 79.4
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 1.8e-72 276.2 165 81.8
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 2.4e-72 275.8 192 72.9
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.2e-72 275.4 164 82.3
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.1e-72 275.0 163 82.2
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.1e-72 275.0 163 82.2
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.1e-72 275.0 163 82.2
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 5.4e-72 274.6 164 78.7
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 1.2e-71 273.5 167 82.0
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 1.6e-71 273.1 165 81.2
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 1.6e-71 273.1 165 82.4
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 4.6e-71 271.6 166 80.7
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 6.0e-71 271.2 163 80.4
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 1.0e-70 270.4 165 78.8
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 1.0e-70 270.4 165 78.8
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 1.0e-70 270.4 164 81.1
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 1.7e-70 269.6 165 78.8
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.5e-69 266.5 165 76.4
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.5e-69 265.8 195 70.3
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 2.1e-68 262.7 167 77.2
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 2.8e-68 262.3 164 76.8
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 1.1e-67 260.4 164 76.8
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 2.6e-66 255.8 194 68.6
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 4.4e-66 255.0 165 76.4
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 1.3e-65 253.4 180 71.7
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 3.7e-65 251.9 163 77.3
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 1.1e-61 240.4 161 72.0
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 5.6e-61 238.0 166 69.3
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 1.8e-59 233.0 162 68.5
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 6.8e-59 231.1 141 80.9
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 6.8e-59 231.1 142 80.3
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.5e-58 229.9 138 81.2
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.6e-58 229.2 148 79.1
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 1.3e-57 226.9 138 81.2
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 4.9e-57 224.9 166 66.3
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 1.4e-56 223.4 166 66.9
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 1.9e-56 223.0 169 69.2
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 3.2e-56 222.2 134 82.1
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 1.6e-55 219.9 130 83.1
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 7.3e-53 211.1 144 77.1
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 2.6e-50 202.6 133 78.2
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 7.8e-47 191.0 168 58.9
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 1.7e-46 189.9 167 59.3
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 9.6e-45 184.1 164 57.3
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 1.6e-44 183.3 116 77.6
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 1.1e-43 180.6 90 93.3
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 3.4e-42 175.6 90 90.0
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 9.9e-42 174.1 165 50.3
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 1.1e-40 170.6 162 58.6
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 4.8e-36 155.2 134 57.5
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.9e-35 151.4 100 74.0
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.9e-35 151.4 100 74.0
arahy.Tifrunner.gnm1.ann1.N6YLHX Arachis hypogaea HOM05D004063 ORTHO05D005326 9.9e-34 147.5 93 75.3
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 2.9e-33 146.0 72 94.4
Rhsim06G0007000 Rhododendron simsii HOM05D004063 ORTHO05D005326 8.4e-33 144.4 128 59.4
AagrBONN_evm.TU.Sc2ySwM_117.93 Anthoceros agrestis HOM05D004063 ORTHO05D005326 2.8e-28 129.4 97 63.9
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 8.1e-28 127.9 90 70.0
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.1e-28 127.9 148 51.4
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 1.4e-24 117.1 64 85.9
MBI08_g41353_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 1.6e-23 113.6 72 77.8
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 1.3e-22 110.5 90 64.4
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 1.3e-22 110.5 90 64.4
Cc07_g21130 Coffea canephora HOM05D004063 ORTHO05D005326 1.3e-22 110.5 64 82.8
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 1.8e-22 110.2 90 64.4
SalBow5G3904 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.5e-21 106.3 53 92.5
ATR0219G025 Amborella trichopoda HOM05D004063 ORTHO05D005326 2.8e-20 102.8 65 67.7
vmacro04405 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 2.8e-20 102.8 52 92.3
arahy.Tifrunner.gnm1.ann1.T1UNZ1 Arachis hypogaea HOM05D004063 ORTHO05D005326 1.8e-19 100.1 89 62.9
Rhsim13G0010800 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.0e-17 94.4 86 59.3
Cc07_g21170 Coffea canephora HOM05D004063 ORTHO05D005326 2.7e-15 86.3 46 82.6
TAR381G0210 Trochodendron aralioides HOM05D004063 ORTHO05D005326 6.0e-15 85.1 139 43.2
Oeu037745.1 Olea europaea HOM05D004063 ORTHO05D005326 2.5e-08 63.2 42 71.4
arahy.Tifrunner.gnm1.ann1.WN1LH4 Arachis hypogaea HOM05D004063 ORTHO05D005326 4.6e-07 58.9 56 55.4
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 6.1e-07 58.5 134 31.3
AagrBONN_evm.TU.Sc2ySwM_228.1008 Anthoceros agrestis HOM05D004063 ORTHO05D038441 7.9e-07 58.2 152 29.6
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 1.0e-06 57.8 103 35.9
SalBow5G1940 Salvia bowleyana HOM05D009895 ORTHO05D022408 1.0e-06 57.8 31 80.6
SalBow5G4685 Salvia bowleyana HOM05D009895 ORTHO05D022408 1.0e-06 57.8 31 80.6
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 1.4e-06 57.4 191 28.3
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 1.4e-06 57.4 99 36.4
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 2.3e-06 56.6 193 25.9
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 3.0e-06 56.2 99 34.3
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 3.9e-06 55.8 191 27.7
Pp3c23_20720 Physcomitrium patens HOM05D004063 ORTHO05D038441 3.9e-06 55.8 142 31.7
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 3.9e-06 55.8 99 33.3
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 5.1e-06 55.5 103 38.8
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 6.7e-06 55.1 99 34.3
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 6.7e-06 55.1 99 38.4
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 8.8e-06 54.7 99 35.4
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 8.8e-06 54.7 99 33.3
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 8.8e-06 54.7 99 33.3
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 8.8e-06 54.7 99 33.3


User provided reference genes

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