Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.3e-112 409.8 214 100.0
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 1.5e-105 386.3 215 94.9
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 4.5e-78 295.0 213 73.7
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 7.9e-75 284.3 189 81.0
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 7.0e-71 271.2 212 69.8
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 9.1e-71 270.8 213 68.5
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.5e-68 263.5 210 68.6
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.9e-68 263.1 212 68.9
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 1.0e-66 257.3 210 66.7
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 4.4e-65 251.9 211 65.9
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 7.5e-65 251.1 211 65.4
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 4.8e-64 248.4 212 66.5
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 7.7e-62 241.1 206 65.0
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 1.0e-61 240.7 209 64.6
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.2e-60 235.7 219 62.6
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 3.2e-60 235.7 210 63.8
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 4.2e-60 235.3 210 61.9
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.6e-59 233.4 219 62.1
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.6e-59 233.4 219 62.1
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 2.3e-58 229.6 210 62.9
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 3.0e-58 229.2 209 60.8
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 9.8e-57 224.2 211 58.8
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 3.7e-56 222.2 211 60.7
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 1.1e-55 220.7 213 60.6
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.8e-55 219.9 209 60.8
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 3.1e-55 219.2 211 57.3
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 3.1e-55 219.2 212 61.3
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 4.1e-55 218.8 209 60.3
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.0e-54 216.5 192 64.6
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 2.7e-54 216.1 210 60.5
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 1.3e-53 213.8 212 59.9
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 1.5e-52 210.3 207 57.5
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 3.2e-52 209.1 215 56.3
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 1.2e-51 207.2 215 57.2
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.6e-51 205.7 211 57.3
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.3e-50 203.0 211 56.9
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 3.0e-50 202.6 215 56.7
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 5.2e-50 201.8 211 58.3
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 1.5e-49 200.3 213 57.3
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 2.6e-49 199.5 215 54.9
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 3.4e-49 199.1 213 58.2
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 2.8e-48 196.1 216 56.0
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 2.8e-48 196.1 212 58.0
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 3.7e-48 195.7 222 56.3
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 4.9e-48 195.3 214 54.7
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 6.3e-48 194.9 213 54.9
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 3.1e-47 192.6 207 54.1
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 1.6e-46 190.3 210 54.8
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 5.9e-46 188.3 208 53.8
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.3e-45 187.2 210 55.7
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 2.3e-45 186.4 215 54.9
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 1.1e-44 184.1 229 53.3
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 4.3e-44 182.2 225 54.2
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 5.6e-44 181.8 211 54.0
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 7.3e-44 181.4 215 56.3
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 1.6e-43 180.3 221 54.3
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 3.6e-43 179.1 213 52.6
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 3.6e-43 179.1 215 53.5
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 8.0e-43 177.9 221 54.8
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 8.0e-43 177.9 215 53.0
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 2.3e-42 176.4 209 54.1
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 4.0e-42 175.6 222 54.5
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 4.0e-42 175.6 211 53.6
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 6.8e-42 174.9 216 50.9
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.4e-39 167.2 197 53.3
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 3.2e-39 166.0 210 51.9
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 4.1e-39 165.6 147 65.3
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 9.2e-39 164.5 190 56.3
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 9.2e-39 164.5 212 50.0
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 1.2e-38 164.1 211 50.2
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 4.6e-38 162.2 219 49.8
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 8.6e-37 157.9 217 50.7
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 1.9e-36 156.8 218 50.0
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.3e-36 156.0 213 48.8
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 4.3e-36 155.6 217 49.3
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 7.3e-36 154.8 245 47.3
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 7.3e-36 154.8 197 52.3
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 2.8e-35 152.9 215 50.7
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 2.8e-35 152.9 209 50.2
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 3.6e-35 152.5 190 54.2
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 8.0e-35 151.4 213 47.4
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 2.3e-34 149.8 213 46.9
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 6.8e-34 148.3 211 48.8
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.2e-33 147.5 183 53.6
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.2e-33 147.5 183 53.6
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 5.8e-33 145.2 215 47.0
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 5.8e-33 145.2 124 64.5
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 7.5e-33 144.8 193 48.2
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.7e-32 143.7 208 47.1
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.7e-32 142.5 215 47.0
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 8.3e-32 141.4 213 47.4
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 1.1e-31 141.0 211 48.3
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 2.0e-30 136.7 219 44.3
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 6.0e-30 135.2 213 43.7
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 7.8e-30 134.8 210 44.3
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 1.3e-29 134.0 216 47.2
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 1.1e-28 131.0 199 45.7
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 1.9e-28 130.2 220 44.1
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 3.3e-28 129.4 215 46.5
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 4.3e-28 129.0 222 44.1
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 4.3e-28 129.0 196 49.5
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 2.1e-27 126.7 215 43.7
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 3.6e-27 125.9 188 47.9
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 4.7e-27 125.6 193 46.1
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 4.7e-27 125.6 193 46.1
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 1.1e-26 124.4 207 45.4
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 1.8e-26 123.6 197 47.2
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 5.2e-26 122.1 87 70.1
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 8.9e-26 121.3 170 51.8
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 2.6e-25 119.8 196 46.4
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 2.6e-25 119.8 221 43.0
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 5.8e-25 118.6 196 45.9
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 6.0e-22 108.6 213 46.9
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 6.0e-22 108.6 119 52.9
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 7.8e-22 108.2 102 54.9
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 1.0e-21 107.8 181 44.2
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 9.5e-20 101.3 195 43.1
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 4.0e-18 95.9 180 38.3
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 3.4e-17 92.8 174 42.5
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 7.6e-17 91.7 103 53.4
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 1.3e-16 90.9 83 59.0
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 1.3e-16 90.9 83 59.0
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 1.9e-15 87.0 182 41.8
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 1.9e-15 87.0 182 41.8
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 1.9e-15 87.0 182 41.8
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 3.5e-14 82.8 73 61.6
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 4.6e-14 82.4 207 37.7
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 3.0e-13 79.7 191 38.2
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 3.0e-13 79.7 81 50.6
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 1.9e-12 77.0 73 57.5
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 2.1e-11 73.6 168 38.1
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 6.2e-11 72.0 211 37.4
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 1.1e-10 71.2 137 40.9
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 2.0e-09 67.0 212 34.0
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 3.8e-08 62.8 116 44.0
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 3.8e-08 62.8 116 44.0
ECA238G3056 Erigeron canadensis HOM05D002204 ORTHO05D002875 6.4e-08 62.0 106 41.5
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 1.9e-07 60.5 116 42.2
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 1.9e-07 60.5 116 42.2
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 6.0e-06 55.5 238 29.8


User provided reference genes

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