Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 7.1e-267 923.3 451 100.0
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 1.4e-209 733.0 451 82.9
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 4.3e-163 578.6 438 66.9
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 1.3e-151 540.4 449 61.5
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 3.7e-146 522.3 457 61.1
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 6.2e-146 521.5 447 60.4
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.3e-143 513.8 448 59.8
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.1e-142 510.8 448 59.4
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 1.2e-141 507.3 442 58.8
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 4.6e-141 505.4 439 59.7
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 6.0e-141 505.0 448 58.5
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 3.0e-140 502.7 447 59.1
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 3.0e-140 502.7 434 60.6
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 5.1e-140 501.9 431 60.6
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 5.6e-139 498.4 452 58.6
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 2.1e-138 496.5 437 58.1
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 2.8e-138 496.1 448 57.8
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 5.3e-137 491.9 446 58.1
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 6.9e-137 491.5 444 57.2
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 6.5e-135 485.0 445 57.8
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 5.5e-134 481.9 457 57.1
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 2.1e-133 479.9 431 58.7
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 3.5e-133 479.2 447 55.7
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 3.5e-133 479.2 432 57.4
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.3e-132 476.5 455 56.3
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 3.9e-132 475.7 444 55.0
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 3.3e-131 472.6 447 56.2
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.3e-131 472.2 455 54.5
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 7.4e-131 471.5 457 54.5
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 3.1e-129 466.1 436 56.0
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 9.0e-129 464.5 457 54.0
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.2e-128 464.2 452 55.8
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 2.0e-128 463.4 440 56.8
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 2.0e-128 463.4 440 56.8
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 2.0e-128 463.4 440 56.8
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 2.6e-128 463.0 435 54.9
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 7.7e-128 461.5 434 55.3
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.0e-127 461.1 450 54.7
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 1.0e-127 461.1 446 53.1
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 1.0e-127 461.1 430 55.6
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 1.3e-127 460.7 430 56.0
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 1.7e-127 460.3 439 55.8
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 2.9e-127 459.5 439 55.8
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 3.8e-127 459.1 355 63.1
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 5.0e-127 458.8 441 52.4
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 8.5e-127 458.0 439 54.7
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 1.9e-126 456.8 443 54.2
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 1.9e-126 456.8 440 53.4
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 2.5e-126 456.4 439 55.4
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 2.5e-126 456.4 459 53.2
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 3.2e-126 456.1 439 55.8
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 9.4e-126 454.5 430 55.1
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.2e-125 454.1 439 55.1
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 2.1e-125 453.4 434 56.0
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 2.1e-125 453.4 445 53.7
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 6.1e-125 451.8 439 54.9
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 6.1e-125 451.8 439 54.9
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 6.1e-125 451.8 439 54.9
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 1.0e-124 451.1 439 54.9
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.0e-124 451.1 436 54.6
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 1.4e-124 450.7 448 54.5
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 2.3e-124 449.9 443 52.4
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 2.3e-124 449.9 430 55.6
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 3.9e-124 449.1 431 53.6
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 5.1e-124 448.7 430 53.7
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 6.7e-124 448.4 447 53.2
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 8.8e-124 448.0 447 53.0
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 3.3e-123 446.0 439 53.1
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 4.3e-123 445.7 460 52.8
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 4.3e-123 445.7 431 54.5
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 4.3e-123 445.7 430 54.2
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 5.7e-123 445.3 441 54.4
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 7.4e-123 444.9 429 53.4
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 7.4e-123 444.9 461 52.9
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 7.4e-123 444.9 455 52.3
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 1.3e-122 444.1 442 53.6
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 1.7e-122 443.7 430 53.3
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.8e-122 443.0 427 54.8
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 4.8e-122 442.2 439 54.4
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 1.1e-121 441.0 450 50.7
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 1.4e-121 440.7 439 53.3
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.2e-120 437.6 432 53.5
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.5e-120 437.2 454 51.3
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 2.0e-120 436.8 446 53.1
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.4e-120 436.0 433 54.3
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 3.4e-120 436.0 429 55.7
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 3.4e-120 436.0 443 53.0
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 4.5e-120 435.6 450 51.3
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 1.0e-119 434.5 433 51.3
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.7e-119 433.7 401 54.6
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 2.5e-118 429.9 431 53.8
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 9.4e-118 427.9 251 76.9
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 1.2e-117 427.6 407 56.8
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 2.1e-117 426.8 430 52.6
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 2.7e-117 426.4 438 51.8
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 3.6e-117 426.0 446 49.8
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.4e-116 424.1 446 51.6
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 2.3e-116 423.3 444 50.9
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 3.0e-116 422.9 444 49.8
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 3.0e-116 422.9 421 51.5
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 6.7e-116 421.8 462 50.4
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 3.3e-115 419.5 378 54.5
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 4.4e-115 419.1 445 53.0
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 9.7e-115 417.9 437 51.0
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 1.3e-114 417.5 430 51.9
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 6.3e-114 415.2 462 50.6
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 8.2e-114 414.8 435 49.9
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 5.3e-113 412.1 345 58.3
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 9.1e-113 411.4 437 50.3
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 2.0e-112 410.2 438 49.3
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 2.6e-112 409.8 438 49.5
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 1.7e-111 407.1 447 51.0
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 2.2e-111 406.8 437 49.4
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 1.4e-110 404.1 445 47.9
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 3.2e-110 402.9 250 72.0
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 7.2e-110 401.7 454 48.0
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 9.4e-110 401.4 441 51.7
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 1.2e-109 401.0 445 47.0
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 1.6e-109 400.6 458 50.4
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 2.7e-109 399.8 456 50.7
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 8.0e-109 398.3 444 48.6
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 1.0e-108 397.9 440 50.2
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 3.0e-108 396.4 348 56.9
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 3.9e-108 396.0 454 49.6
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 5.2e-108 395.6 340 56.5
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 2.6e-107 393.3 430 48.4
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 7.4e-107 391.7 441 46.3
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 7.4e-107 391.7 256 68.4
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 1.7e-106 390.6 441 49.9
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-105 387.5 439 48.7
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-105 387.5 444 49.8
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 5.0e-103 379.0 330 58.2
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 8.5e-103 378.3 240 72.1
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 4.2e-102 375.9 436 48.9
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 9.4e-102 374.8 363 52.9
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 2.0e-99 367.1 443 47.4
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 9.7e-99 364.8 344 52.9
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 4.8e-98 362.5 353 50.7
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 1.6e-96 357.5 240 68.3
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 7.2e-94 348.6 260 61.5
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.2e-91 341.3 427 44.5
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 1.7e-87 327.4 238 61.3
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 3.8e-87 326.2 372 46.5
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 3.3e-86 323.2 378 45.2
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 9.5e-86 321.6 372 46.0
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.8e-84 317.4 344 45.9
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 2.8e-82 310.1 455 43.7
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 3.1e-81 306.6 347 46.4
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 2.0e-80 303.9 384 42.2
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 5.9e-80 302.4 238 58.0
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.9e-79 300.1 375 44.5
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 6.6e-79 298.9 341 44.6
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.6e-75 287.0 355 43.7
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 1.3e-74 284.6 239 53.6
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 1.3e-71 274.6 393 39.7
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 1.7e-71 274.2 338 42.6
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.7e-71 274.2 342 41.5
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 1.7e-71 274.2 375 41.1
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 2.1e-69 267.3 349 41.8
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 8.0e-69 265.4 340 41.2
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 1.6e-64 251.1 312 49.0
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 1.3e-58 231.5 344 41.0
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.9e-57 227.6 340 36.8
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.4e-57 227.3 343 36.4
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 9.2e-57 225.3 357 36.7
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 3.3e-54 216.9 345 34.2
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.6e-53 214.5 347 35.7
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.8e-51 206.1 381 33.6
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 2.8e-45 187.2 391 31.7
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.1e-44 185.3 352 33.0
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 1.3e-42 178.3 89 91.0
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 2.2e-42 177.6 152 59.2
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 1.8e-28 131.3 285 27.7
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 1.3e-23 115.2 106 52.8
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.5e-22 110.9 100 49.0
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 9.6e-22 109.0 120 43.3
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 2.1e-21 107.8 131 53.4
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 1.6e-16 91.7 82 46.3
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 7.9e-16 89.4 86 45.3
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.7e-08 64.3 72 37.5


User provided reference genes

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