Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014058 Carpinus fangiana HOM05D000192 ORTHO05D006528 5.4e-102 374.4 199 100.0
Cfa014060 Carpinus fangiana HOM05D000192 ORTHO05D006528 8.4e-87 323.9 175 99.4
Haze_22755 Corylus avellana HOM05D000192 ORTHO05D006528 3.2e-86 322.0 176 96.6
QL02p013914 Quercus lobata HOM05D000192 ORTHO05D006528 1.1e-65 253.8 173 78.0
CiPaw.07G139700 Carya illinoinensis HOM05D000192 ORTHO05D006528 2.2e-58 229.6 180 72.2
Potri.002G011600 Populus trichocarpa HOM05D000192 ORTHO05D006528 1.9e-54 216.5 170 69.4
Sabra05G0193000 Salix brachista HOM05D000192 ORTHO05D006528 2.5e-54 216.1 179 64.8
Potri.005G249500 Populus trichocarpa HOM05D000192 ORTHO05D006528 2.1e-53 213.0 179 65.4
COL.COLO4_03996 Corchorus olitorius HOM05D000192 ORTHO05D006528 6.1e-53 211.5 174 62.1
Ciclev10003381m.g Citrus clementina HOM05D000192 ORTHO05D006528 9.7e-51 204.1 174 61.5
Manes.18G006100 Manihot esculenta HOM05D000192 ORTHO05D006528 9.7e-51 204.1 174 63.8
Gohir.D01G093300 Gossypium hirsutum HOM05D000192 ORTHO05D006528 1.7e-50 203.4 174 59.8
Thecc.08G057400 Theobroma cacao HOM05D000192 ORTHO05D006528 2.8e-50 202.6 174 60.9
Gohir.A01G106900 Gossypium hirsutum HOM05D000192 ORTHO05D006528 1.1e-49 200.7 174 59.8
Gorai.002G118700 Gossypium raimondii HOM05D000192 ORTHO05D006528 7.0e-49 198.0 174 58.0
Duzib041G0263 Durio zibethinus HOM05D000192 ORTHO05D006528 9.1e-49 197.6 174 59.8
Duzib093G0457 Durio zibethinus HOM05D000192 ORTHO05D006528 1.6e-48 196.8 174 58.0
Sabra02G0009100 Salix brachista HOM05D000192 ORTHO05D006528 1.6e-48 196.8 163 65.6
Atru.chr13.154 Acer truncatum HOM05D000192 ORTHO05D006528 1.3e-47 193.7 178 59.0
Manes.05G135200 Manihot esculenta HOM05D000192 ORTHO05D006528 2.9e-47 192.6 176 61.9
Sabra02G0009200 Salix brachista HOM05D000192 ORTHO05D006528 1.1e-46 190.7 166 62.7
Gohir.D05G183100 Gossypium hirsutum HOM05D000192 ORTHO05D006528 1.5e-46 190.3 176 54.5
Gohir.A05G180100 Gossypium hirsutum HOM05D000192 ORTHO05D006528 3.2e-46 189.1 176 54.5
FAN27G2646 Fragaria x ananassa HOM05D000192 ORTHO05D006528 2.7e-45 186.0 182 58.8
FAN15G0671 Fragaria x ananassa HOM05D000192 ORTHO05D006528 8.0e-45 184.5 183 60.1
FvH4_2g37580 Fragaria vesca HOM05D000192 ORTHO05D006528 4.0e-44 182.2 182 58.2
Cpa.g.sc26.210 Carica papaya HOM05D000192 ORTHO05D006528 8.8e-44 181.0 178 57.9
TAR628G1559 Trochodendron aralioides HOM05D000192 ORTHO05D006528 2.6e-43 179.5 175 60.6
RcHm_v2.0_Chr6g0304151 Rosa chinensis HOM05D000192 ORTHO05D006528 3.3e-43 179.1 176 58.0
Nn5g30919 Nelumbo nucifera HOM05D000192 ORTHO05D006528 3.7e-42 175.6 181 58.0
CANSAT25G1315 Cannabis sativa HOM05D000192 ORTHO05D006528 4.5e-40 168.7 187 56.1
TWI56G1025 Tripterygium wilfordii HOM05D000192 ORTHO05D006528 5.9e-40 168.3 174 55.2
vmacro04400 Vaccinium macrocarpon HOM05D000192 ORTHO05D006528 5.9e-40 168.3 175 58.9
TAR376G0017 Trochodendron aralioides HOM05D000192 ORTHO05D006528 1.0e-39 167.5 175 58.3
Rhsim07G0254600 Rhododendron simsii HOM05D000192 ORTHO05D006528 1.9e-38 163.3 176 58.0
Rhsim07G0254500 Rhododendron simsii HOM05D000192 ORTHO05D006528 1.2e-37 160.6 176 56.2
Rhsim07G0254400 Rhododendron simsii HOM05D000192 ORTHO05D006528 8.0e-37 157.9 176 58.0
Actinidia37969 Actinidia chinensis HOM05D000192 ORTHO05D006528 1.0e-36 157.5 176 54.0
Lj1g0016081 Lotus japonicus HOM05D000192 ORTHO05D006528 3.0e-36 156.0 193 50.8
Glyma.04G018800 Glycine max HOM05D000192 ORTHO05D006528 1.2e-35 154.1 183 52.5
DCAR_009526 Daucus carota HOM05D000192 ORTHO05D006528 2.6e-35 152.9 176 48.3
Cc10_g00760 Coffea canephora HOM05D000192 ORTHO05D006528 3.4e-35 152.5 179 50.3
Solyc04g082270.3 Solanum lycopersicum HOM05D000192 ORTHO05D006528 4.4e-35 152.1 175 53.7
Sopen04g035890 Solanum pennellii HOM05D000192 ORTHO05D006528 4.4e-35 152.1 175 53.7
VMungo1309G1647 Vigna mungo HOM05D000192 ORTHO05D006528 7.5e-35 151.4 183 49.2
arahy.Tifrunner.gnm1.ann1.D59EVQ Arachis hypogaea HOM05D000192 ORTHO05D006528 9.8e-35 151.0 197 47.7
CAN.G311.110 Capsicum annuum HOM05D000192 ORTHO05D006528 9.8e-35 151.0 175 53.1
PGSC0003DMG400009973 Solanum tuberosum HOM05D000192 ORTHO05D006528 1.7e-34 150.2 175 53.1
CsaV3_4G037150 Cucumis sativus L. HOM05D000192 ORTHO05D006528 2.2e-34 149.8 179 50.8
Oeu004529.1 Olea europaea HOM05D000192 ORTHO05D006528 3.7e-34 149.1 174 47.7
Prupe.1G355300 Prunus persica HOM05D000192 ORTHO05D006528 3.7e-34 149.1 206 48.5
MELO3C017013.2 Cucumis melo HOM05D000192 ORTHO05D006528 1.4e-33 147.1 180 50.6
Nn6g31750 Nelumbo nucifera HOM05D000192 ORTHO05D006528 1.4e-33 147.1 178 51.1
Peaxi162Scf01481g00033 Petunia axillaris HOM05D000192 ORTHO05D006528 1.8e-33 146.7 151 58.9
Medtr3g115150 Medicago truncatula HOM05D000192 ORTHO05D006528 2.4e-33 146.4 189 49.2
ClCG11G018620 Citrullus lanatus HOM05D000192 ORTHO05D006528 1.2e-32 144.1 177 50.8
TPR.G38156 Trifolium pratense HOM05D000192 ORTHO05D006528 2.0e-32 143.3 188 46.8
Thhalv10019441m.g Eutrema salsugineum HOM05D000192 ORTHO05D006528 2.7e-32 142.9 179 48.6
Glyma.06G019100 Glycine max HOM05D000192 ORTHO05D006528 3.5e-32 142.5 186 48.9
Phvul.009G021700 Phaseolus vulgaris HOM05D000192 ORTHO05D006528 4.5e-32 142.1 186 47.8
PGR083G2156 Punica granatum HOM05D000192 ORTHO05D006528 5.9e-32 141.7 183 50.8
CSS0046122 Camellia sinensis var. sinensis HOM05D000192 ORTHO05D006528 7.7e-32 141.4 148 59.5
Nitab4.5_0000337g0210 Nicotiana tabacum HOM05D000192 ORTHO05D006528 1.3e-31 140.6 178 51.1
Sp5g31380 Schrenkiella parvula HOM05D000192 ORTHO05D006528 8.5e-31 137.9 178 47.8
Aa31LG4G6330 Aethionema arabicum HOM05D000192 ORTHO05D006528 1.5e-30 137.1 189 46.0
Ca_15442_v3 Cicer arietinum L. HOM05D000192 ORTHO05D006528 1.9e-30 136.7 187 45.5
THA.LOC104809754 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 2.5e-30 136.3 178 47.8
AL2G36320 Arabidopsis lyrata HOM05D000192 ORTHO05D006528 4.2e-30 135.6 178 48.3
BcaC08g47122 Brassica carinata HOM05D000192 ORTHO05D006528 4.2e-30 135.6 178 47.8
Peaxi162Scf00400g00022 Petunia axillaris HOM05D000192 ORTHO05D006528 4.2e-30 135.6 174 48.9
BcaC08g47275 Brassica carinata HOM05D000192 ORTHO05D006528 5.5e-30 135.2 184 47.8
C06p50200 Brassica napus HOM05D000192 ORTHO05D006528 5.5e-30 135.2 184 47.8
BolC6t40060H Brassica oleracea HOM05D000192 ORTHO05D006528 5.5e-30 135.2 184 47.8
MD08G1003400 Malus domestica HOM05D000192 ORTHO05D006528 5.5e-30 135.2 203 44.3
A07p41810 Brassica napus HOM05D000192 ORTHO05D006528 7.2e-30 134.8 184 48.4
AT1G76240 Arabidopsis thaliana HOM05D000192 ORTHO05D006528 1.6e-29 133.7 178 47.8
Oeu011326.1 Olea europaea HOM05D000192 ORTHO05D006528 1.6e-29 133.7 168 48.8
Nitab4.5_0002710g0070 Nicotiana tabacum HOM05D000192 ORTHO05D006528 2.8e-29 132.9 178 48.3
THA.LOC104813758 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 2.8e-29 132.9 184 46.2
Sed0010871 Sechium edule HOM05D000192 ORTHO05D006528 3.6e-29 132.5 176 46.0
BraA07t31711Z Brassica rapa HOM05D000192 ORTHO05D006528 8.0e-29 131.3 184 47.8
Carub.0002s2313 Capsella rubella HOM05D000192 ORTHO05D006528 1.4e-28 130.6 178 46.1
THA.LOC104807040 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 1.4e-28 130.6 187 43.3
Lalb_Chr03g0033641 Lupinus albus HOM05D000192 ORTHO05D006528 4.4e-27 125.6 180 46.1
CARHR069800 Cardamine hirsuta HOM05D000192 ORTHO05D006528 5.7e-27 125.2 178 44.4
PSO675G4094 Papaver somniferum HOM05D000192 ORTHO05D006528 3.7e-26 122.5 193 43.5
Eucgr.F01753 Eucalyptus grandis HOM05D000192 ORTHO05D006528 6.3e-26 121.7 150 50.7
Migut.C00947 Erythranthe guttata HOM05D000192 ORTHO05D006528 7.0e-25 118.2 175 45.7
PSO541G6369 Papaver somniferum HOM05D000192 ORTHO05D006528 9.2e-25 117.9 193 43.0
Sed0016603 Sechium edule HOM05D000192 ORTHO05D006528 1.3e-23 114.0 175 41.1
Ah.11g041040 Amaranthus hybridus HOM05D000192 ORTHO05D006528 2.3e-23 113.2 194 43.3
EL10Ac1g01984 Beta vulgaris HOM05D000192 ORTHO05D006528 8.6e-23 111.3 197 44.2
ClCG08G009500 Citrullus lanatus HOM05D000192 ORTHO05D006528 8.6e-23 111.3 176 41.5
ClCG08G009560 Citrullus lanatus HOM05D000192 ORTHO05D006528 8.6e-23 111.3 176 41.5
HanXRQChr05g0146821 Helianthus annuus HOM05D000192 ORTHO05D006528 1.1e-22 110.9 174 44.3
BcaB05g24976 Brassica carinata HOM05D000192 ORTHO05D006528 9.5e-22 107.8 184 41.8
Aqoxy6G01755 Aquilegia oxysepala HOM05D000192 ORTHO05D006528 1.2e-21 107.5 180 42.2
MBI08_g42655_MAGBIO Magnolia biondii HOM05D000192 ORTHO05D006528 1.2e-21 107.5 179 40.8
Lsat_1_v5_gn_9_44960 Lactuca sativa HOM05D000192 ORTHO05D006528 1.6e-21 107.1 177 42.4
CsaV3_6G031640 Cucumis sativus L. HOM05D000192 ORTHO05D006528 2.1e-21 106.7 176 40.9
Gorai.009G188400 Gossypium raimondii HOM05D000192 ORTHO05D006528 2.1e-21 106.7 109 51.4
MELO3C026545.2 Cucumis melo HOM05D000192 ORTHO05D006528 1.0e-20 104.4 176 41.5
Sed0005663 Sechium edule HOM05D000192 ORTHO05D006528 1.0e-20 104.4 174 37.9
GSVIVG01008683001 Vitis vinifera HOM05D000192 ORTHO05D006528 1.4e-20 104.0 76 71.1
SalBow7G2283 Salvia bowleyana HOM05D000192 ORTHO05D006528 3.0e-20 102.8 153 44.4
AUR62036889 Chenopodium quinoa HOM05D000192 ORTHO05D006528 4.0e-20 102.4 193 42.5
Migut.C00951 Erythranthe guttata HOM05D000192 ORTHO05D006528 4.0e-20 102.4 148 43.2
ECA232G4383 Erigeron canadensis HOM05D000192 ORTHO05D006528 1.5e-19 100.5 171 40.9
SGA_v2.0_scaffold108G30845 Striga asiatica HOM05D000192 ORTHO05D006528 9.8e-19 97.8 173 42.2
PSO170G2613 Papaver somniferum HOM05D000192 ORTHO05D006528 8.3e-18 94.7 189 38.6
Sc15g0004480 Simmondsia chinensis HOM05D000192 ORTHO05D006528 8.3e-18 94.7 173 39.9
unitig_747.g21520 Utricularia gibba HOM05D000192 ORTHO05D006528 5.0e-15 85.5 174 37.4
unitig_0.g2103 Utricularia gibba HOM05D000192 ORTHO05D006528 4.3e-14 82.4 174 35.1
Ah.00g000410 Amaranthus hybridus HOM05D000192 ORTHO05D006528 3.6e-13 79.3 193 37.3
Psat5g011840 Pisum sativum HOM05D000192 ORTHO05D006528 3.1e-12 76.3 108 43.5
CDE04G2625 Ceratophyllum demersum HOM05D000192 ORTHO05D006528 8.9e-12 74.7 154 38.3
Actinidia29784 Actinidia chinensis HOM05D000192 ORTHO05D006528 4.4e-11 72.4 131 38.2
CDE02G3917 Ceratophyllum demersum HOM05D000192 ORTHO05D006528 1.7e-10 70.5 153 37.3
BcaC04g22821 Brassica carinata HOM05D000192 ORTHO05D006528 1.1e-09 67.8 132 41.7
PSO210G4940 Papaver somniferum HOM05D000192 ORTHO05D006528 7.0e-09 65.1 173 34.1
Os06g0725500 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 1.6e-08 63.9 182 28.0
A07p08880 Brassica napus HOM05D000192 ORTHO05D006528 2.0e-08 63.5 119 41.2
ATR0661G095 Amborella trichopoda HOM05D000192 ORTHO05D006528 7.8e-08 61.6 179 31.8
Rhsim10G0204300 Rhododendron simsii HOM05D000192 ORTHO05D000123 6.6e-07 58.5 180 28.9
Gohir.D11G177850 Gossypium hirsutum HOM05D000192 ORTHO05D000123 8.6e-07 58.2 183 28.4
Gorai.007G189700 Gossypium raimondii HOM05D000192 ORTHO05D000123 1.5e-06 57.4 183 28.4
Gohir.A11G170600 Gossypium hirsutum HOM05D000192 ORTHO05D000123 1.9e-06 57.0 193 28.0
Gohir.D11G177800 Gossypium hirsutum HOM05D000192 ORTHO05D000123 2.5e-06 56.6 193 28.0
Os10g0510200 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 2.5e-06 56.6 183 25.7
TAR376G1126 Trochodendron aralioides HOM05D000192 ORTHO05D000123 4.3e-06 55.8 169 30.2
FAN23G0911 Fragaria x ananassa HOM05D000192 ORTHO05D000123 5.6e-06 55.5 180 31.1
FAN28G2601 Fragaria x ananassa HOM05D000192 ORTHO05D000123 5.6e-06 55.5 182 31.3
HPP92_003498 Vanilla planifolia HOM05D000192 ORTHO05D006528 7.3e-06 55.1 180 31.1
FAN19G3203 Fragaria x ananassa HOM05D000192 ORTHO05D000123 9.5e-06 54.7 182 31.9
Gorai.007G189600 Gossypium raimondii HOM05D000192 ORTHO05D000123 9.5e-06 54.7 193 27.5
Os06g0725800 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 9.5e-06 54.7 174 27.6
TWI73G0614 Tripterygium wilfordii HOM05D000192 ORTHO05D000123 9.5e-06 54.7 185 30.8


User provided reference genes

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