Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 4.9e-37 157.1 72 100.0
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.9e-33 145.2 65 93.8
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 1.4e-31 139.0 67 88.1
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 2.4e-31 138.3 65 89.2
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.9e-31 136.7 65 86.2
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.2e-30 136.0 71 78.9
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 1.2e-30 136.0 64 85.9
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.5e-30 135.6 67 83.6
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 3.4e-30 134.4 69 79.7
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 4.5e-30 134.0 67 80.6
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 5.8e-30 133.7 65 84.6
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 7.6e-30 133.3 66 83.3
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 1.0e-29 132.9 63 82.5
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 1.0e-29 132.9 63 82.5
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.0e-29 132.9 65 84.6
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 1.3e-29 132.5 69 79.7
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.3e-29 132.5 63 88.9
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 2.2e-29 131.7 63 87.3
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 2.9e-29 131.3 64 82.8
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 2.9e-29 131.3 64 82.8
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 2.9e-29 131.3 64 82.8
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 2.9e-29 131.3 64 82.8
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 2.9e-29 131.3 65 83.1
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.9e-29 131.3 65 83.1
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 2.9e-29 131.3 65 83.1
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 3.8e-29 131.0 65 83.1
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 3.8e-29 131.0 64 85.9
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 3.8e-29 131.0 65 84.6
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 6.5e-29 130.2 65 83.1
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 6.5e-29 130.2 64 82.8
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 6.5e-29 130.2 61 83.6
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 8.4e-29 129.8 68 82.4
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 8.4e-29 129.8 61 83.6
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 1.1e-28 129.4 63 84.1
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 1.1e-28 129.4 64 81.2
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 1.1e-28 129.4 64 79.7
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 1.1e-28 129.4 64 82.8
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 1.4e-28 129.0 67 79.1
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.4e-28 129.0 65 81.5
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.4e-28 129.0 63 85.7
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.4e-28 129.0 63 87.3
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 1.9e-28 128.6 67 80.6
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 2.5e-28 128.3 63 82.5
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 2.5e-28 128.3 65 78.5
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 2.5e-28 128.3 62 80.6
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 3.2e-28 127.9 63 79.4
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 7.1e-28 126.7 62 82.3
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 7.1e-28 126.7 64 81.2
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 9.3e-28 126.3 65 81.5
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 9.3e-28 126.3 64 81.2
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 9.3e-28 126.3 64 79.7
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 9.3e-28 126.3 64 78.1
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.6e-27 125.6 63 81.0
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 1.6e-27 125.6 63 81.0
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 2.1e-27 125.2 64 76.6
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 2.1e-27 125.2 64 78.1
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 2.1e-27 125.2 65 76.9
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 2.7e-27 124.8 65 80.0
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 6.0e-27 123.6 66 77.3
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 7.9e-27 123.2 58 82.8
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 7.9e-27 123.2 64 76.6
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.0e-26 122.9 67 73.1
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 1.3e-26 122.5 64 76.6
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 1.8e-26 122.1 66 74.2
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 1.8e-26 122.1 66 74.2
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.8e-26 122.1 64 75.0
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.8e-26 122.1 64 75.0
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 5.1e-26 120.6 66 75.8
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 6.7e-26 120.2 68 73.5
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 1.5e-25 119.0 71 70.4
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 1.3e-24 115.9 62 75.8
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 1.3e-24 115.9 67 73.1
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 2.1e-24 115.2 64 73.4
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 2.8e-24 114.8 67 70.1
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 2.8e-24 114.8 67 71.6
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 2.8e-24 114.8 67 71.6
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 6.2e-24 113.6 70 70.0
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 1.8e-23 112.1 67 70.1
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 3.1e-23 111.3 67 68.7
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 3.1e-23 111.3 65 70.8
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 6.9e-23 110.2 61 68.9
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 6.9e-23 110.2 61 68.9
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 6.9e-23 110.2 61 68.9
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 6.9e-23 110.2 61 68.9
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 6.9e-23 110.2 61 68.9
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 1.5e-22 109.0 61 70.5
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 2.0e-22 108.6 63 68.3
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 2.0e-22 108.6 63 68.3
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 2.0e-22 108.6 63 68.3
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 2.0e-22 108.6 51 88.2
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 4.5e-22 107.5 61 68.9
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 5.8e-22 107.1 52 80.8
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 7.6e-22 106.7 64 70.3
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 7.6e-22 106.7 64 70.3
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 1.0e-21 106.3 50 88.0
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 1.7e-21 105.5 64 68.8
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 3.8e-21 104.4 51 80.4
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 5.0e-21 104.0 50 84.0
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 5.0e-21 104.0 50 82.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 5.0e-21 104.0 52 80.8
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 1.1e-20 102.8 62 64.5
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.4e-20 102.4 64 64.1
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 4.2e-20 100.9 65 61.5
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 2.1e-19 98.6 65 69.2
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 4.6e-19 97.4 48 83.3
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 3.0e-18 94.7 61 60.7
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 6.7e-18 93.6 53 79.2
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 1.5e-17 92.4 51 76.5
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 1.9e-17 92.0 51 76.5
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 4.3e-17 90.9 53 73.6
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 5.7e-17 90.5 60 55.0
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 2.0e-14 82.0 50 68.0
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 6.5e-13 77.0 52 67.3
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.1e-12 76.3 41 80.5
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 7.9e-11 70.1 51 58.8
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.8e-10 68.9 36 80.6
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.8e-10 68.9 36 80.6
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 3.0e-10 68.2 36 77.8
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 5.1e-10 67.4 36 75.0
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 5.1e-10 67.4 34 73.5
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 5.1e-10 67.4 33 78.8
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 8.8e-10 66.6 51 60.8
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 1.1e-09 66.2 34 70.6
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 4.3e-09 64.3 38 68.4
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 9.7e-09 63.2 32 71.9
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 2.2e-08 62.0 30 83.3
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 8.2e-08 60.1 32 71.9


User provided reference genes

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