Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 2.1e-117 425.6 207 100.0
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 6.7e-87 324.3 194 81.4
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 2.4e-84 315.8 205 75.6
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 1.5e-83 313.2 216 71.8
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 1.5e-83 313.2 190 77.4
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 4.5e-83 311.6 172 83.7
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 7.7e-83 310.8 210 72.9
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.3e-82 310.1 176 83.0
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 1.3e-82 310.1 179 79.9
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 1.7e-82 309.7 198 75.8
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 3.8e-82 308.5 176 82.4
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 3.8e-82 308.5 187 79.7
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 6.5e-82 307.8 197 75.6
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 1.9e-81 306.2 179 78.8
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 1.9e-81 306.2 170 84.1
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 2.5e-81 305.8 188 78.2
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 2.5e-81 305.8 196 73.5
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 9.4e-81 303.9 184 77.7
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.6e-80 303.1 213 71.4
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 1.6e-80 303.1 173 79.8
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 2.7e-80 302.4 215 70.7
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 3.6e-80 302.0 184 78.8
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 3.6e-80 302.0 219 69.9
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 4.7e-80 301.6 201 72.6
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 1.4e-79 300.1 213 70.4
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 1.4e-79 300.1 174 79.3
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.8e-79 299.7 184 76.6
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.8e-79 299.7 213 70.9
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 3.9e-79 298.5 180 78.9
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 3.9e-79 298.5 176 80.1
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 8.8e-79 297.4 243 63.8
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 1.5e-78 296.6 172 79.7
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 2.0e-78 296.2 193 72.0
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 2.0e-78 296.2 201 72.1
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 2.6e-78 295.8 174 79.9
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 2.6e-78 295.8 213 67.1
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 4.4e-78 295.0 180 75.6
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 9.7e-78 293.9 194 73.2
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 1.3e-77 293.5 203 70.0
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 1.3e-77 293.5 174 77.0
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 4.8e-77 291.6 198 72.2
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 4.1e-76 288.5 177 78.5
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 5.3e-76 288.1 181 72.9
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 6.9e-76 287.7 173 78.0
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 1.2e-75 287.0 173 75.7
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 1.2e-75 287.0 185 74.6
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 2.0e-75 286.2 207 68.6
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 2.0e-75 286.2 203 69.0
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 1.0e-74 283.9 177 75.1
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 1.3e-74 283.5 173 74.6
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 1.3e-74 283.5 213 66.7
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 5.0e-74 281.6 171 75.4
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 6.5e-74 281.2 199 67.8
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 3.2e-73 278.9 193 69.4
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 9.4e-73 277.3 180 71.1
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 2.1e-72 276.2 175 76.0
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 6.1e-72 274.6 175 72.6
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 8.0e-72 274.2 196 69.4
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 8.0e-72 274.2 196 69.4
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 8.0e-72 274.2 196 69.4
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 1.0e-71 273.9 204 66.2
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 1.0e-71 273.9 204 66.2
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 1.0e-71 273.9 201 66.2
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 3.0e-71 272.3 184 73.9
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 3.0e-71 272.3 183 72.7
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 3.9e-71 271.9 198 66.7
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 1.1e-70 270.4 174 73.6
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 1.5e-70 270.0 192 65.1
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 5.7e-70 268.1 200 68.5
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 9.7e-70 267.3 173 73.4
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 1.7e-69 266.5 181 70.7
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 1.7e-69 266.5 213 63.8
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 1.7e-69 266.5 203 63.1
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 2.2e-69 266.2 201 66.2
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 2.2e-69 266.2 201 66.2
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 2.8e-69 265.8 173 74.0
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 6.3e-69 264.6 172 73.8
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 6.3e-69 264.6 206 64.1
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 1.8e-68 263.1 174 71.8
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 3.1e-68 262.3 173 71.7
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 2.6e-67 259.2 196 67.3
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 2.6e-67 259.2 180 70.6
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 5.9e-67 258.1 203 63.1
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 7.7e-67 257.7 201 65.2
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 1.3e-66 256.9 168 70.2
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 1.7e-66 256.5 180 70.0
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 1.2e-64 250.4 174 67.8
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 2.7e-64 249.2 180 70.6
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 3.0e-63 245.7 177 68.4
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 2.2e-61 239.6 153 73.2
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 1.1e-60 237.3 163 71.2
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.2e-59 233.8 189 63.0
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 2.7e-59 232.6 137 76.6
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 8.5e-58 227.6 133 80.5
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 1.9e-57 226.5 211 60.2
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 4.7e-56 221.9 130 79.2
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 6.3e-53 211.5 137 79.6
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 4.1e-52 208.8 190 56.8
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 7.0e-52 208.0 167 59.3
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 7.7e-51 204.5 143 70.6
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 4.7e-48 195.3 160 62.5
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 1.0e-47 194.1 165 53.3
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 2.3e-47 193.0 124 74.2
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 2.2e-45 186.4 167 52.1
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 8.3e-45 184.5 184 52.7
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 2.4e-44 183.0 178 52.8
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 2.4e-44 183.0 131 65.6
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 4.1e-44 182.2 180 49.4
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 1.1e-36 157.5 118 62.7
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 1.9e-36 156.8 123 63.4
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 7.8e-35 151.4 114 64.9
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 1.0e-34 151.0 85 80.0
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 1.1e-33 147.5 94 72.3
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 1.8e-31 140.2 84 73.8
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 1.5e-30 137.1 143 52.4
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 1.0e-26 124.4 126 50.8
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 2.5e-25 119.8 93 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 2.8e-24 116.3 109 53.2
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 8.1e-24 114.8 63 81.0
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 1.5e-22 110.5 70 80.0
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 4.4e-22 109.0 121 49.6
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 6.6e-18 95.1 99 55.6
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 5.6e-17 92.0 54 75.9
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 7.6e-14 81.6 69 65.2
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 8.4e-13 78.2 235 24.7
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 3.2e-12 76.3 42 85.7
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 1.5e-09 67.4 43 65.1
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 4.3e-09 65.9 57 59.6
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 9.6e-09 64.7 36 83.3


User provided reference genes

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