Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 2.2e-117 425.6 218 100.0
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 2.4e-103 379.0 220 92.3
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 5.0e-40 168.7 217 51.6
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 7.9e-38 161.4 224 53.6
CiPaw.08G068400 Carya illinoinensis HOM05D003331 ORTHO05D003264 2.4e-34 149.8 219 50.2
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 5.3e-34 148.7 176 59.1
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 1.7e-32 143.7 197 53.8
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 1.1e-31 141.0 178 52.2
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 4.2e-31 139.0 224 51.3
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 2.6e-28 129.8 203 48.8
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 1.3e-27 127.5 173 47.4
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 2.8e-27 126.3 203 47.3
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 6.3e-27 125.2 188 45.2
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 1.1e-26 124.4 202 47.5
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 3.1e-26 122.9 211 45.0
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 4.1e-26 122.5 214 44.4
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 2.0e-25 120.2 201 44.8
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 3.4e-25 119.4 215 43.3
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 1.3e-24 117.5 171 48.5
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 1.7e-24 117.1 177 47.5
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 2.9e-24 116.3 166 50.0
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 3.8e-24 115.9 193 45.1
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 1.1e-23 114.4 181 45.9
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 1.4e-23 114.0 182 46.2
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 7.2e-23 111.7 197 45.7
FvH4_2g38080 Fragaria vesca HOM05D003331 ORTHO05D003264 9.4e-23 111.3 183 45.9
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 9.4e-23 111.3 222 42.3
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 6.1e-22 108.6 215 43.7
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 7.9e-22 108.2 196 42.9
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 1.0e-21 107.8 188 42.6
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 2.3e-21 106.7 189 42.3
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.0e-21 106.3 168 45.8
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.9e-21 105.9 172 45.9
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.9e-21 105.9 172 44.8
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 5.2e-21 105.5 172 44.2
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 8.8e-21 104.8 193 43.5
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 8.8e-21 104.8 193 43.5
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 1.5e-20 104.0 208 40.4
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 1.5e-20 104.0 187 44.4
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 3.3e-20 102.8 184 42.4
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 3.3e-20 102.8 214 39.7
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 3.3e-20 102.8 214 39.7
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 7.4e-20 101.7 205 40.5
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 9.7e-20 101.3 187 44.4
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.3e-19 100.9 168 44.6
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 1.7e-19 100.5 181 47.0
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 1.7e-19 100.5 191 42.4
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.7e-19 100.5 168 44.6
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 4.8e-19 99.0 190 42.1
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.8e-19 99.0 192 40.6
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.1e-18 97.8 192 40.6
RcHm_v2.0_Chr6g0303481 Rosa chinensis HOM05D003331 ORTHO05D003264 1.4e-18 97.4 179 43.6
Cpa.g.sc26.287 Carica papaya HOM05D003331 ORTHO05D003264 1.8e-18 97.1 200 43.5
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 3.1e-18 96.3 207 41.5
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 3.1e-18 96.3 207 41.5
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 3.1e-18 96.3 209 41.1
FAN20G2542 Fragaria x ananassa HOM05D003331 ORTHO05D003264 7.0e-18 95.1 176 43.8
Prupe.1G361100 Prunus persica HOM05D003331 ORTHO05D003264 7.0e-18 95.1 203 41.9
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 7.0e-18 95.1 189 41.3
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 1.6e-17 94.0 205 40.5
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 1.6e-17 94.0 192 40.6
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 2.0e-17 93.6 186 41.9
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.0e-17 93.6 182 40.7
Gorai.009G269300 Gossypium raimondii HOM05D003331 ORTHO05D003264 2.0e-17 93.6 174 43.1
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 3.5e-17 92.8 184 41.8
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 3.5e-17 92.8 168 41.7
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 5.9e-17 92.0 186 41.9
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 7.7e-17 91.7 192 40.6
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 7.7e-17 91.7 165 42.4
MD15G1008300 Malus domestica HOM05D003331 ORTHO05D003264 7.7e-17 91.7 184 41.3
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 1.3e-16 90.9 181 40.3
FAN15G0714 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.7e-16 90.5 174 41.4
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 2.2e-16 90.1 194 40.7
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.2e-16 90.1 172 39.5
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 8.5e-16 88.2 201 37.3
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 8.5e-16 88.2 213 38.0
FAN27G3080 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.5e-15 87.4 178 39.9
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 3.2e-15 86.3 187 39.6
Gohir.A05G256250 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.2e-15 86.3 170 41.8
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 4.2e-15 85.9 174 39.7
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 5.5e-15 85.5 193 39.4
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 9.4e-15 84.7 181 40.3
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 1.2e-14 84.3 172 39.0
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 1.6e-14 84.0 220 37.3
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 2.1e-14 83.6 188 39.4
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 2.1e-14 83.6 188 39.4
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 2.1e-14 83.6 199 39.7
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 3.6e-14 82.8 176 38.6
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.0e-13 81.3 172 38.4
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.0e-13 81.3 172 37.8
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 1.4e-13 80.9 217 41.0
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 1.8e-13 80.5 167 40.1
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 1.8e-13 80.5 164 38.4
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.8e-13 80.5 194 38.1
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 1.8e-13 80.5 178 38.2
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 3.0e-13 79.7 177 41.8
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 3.0e-13 79.7 187 38.0
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 4.0e-13 79.3 164 39.0
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 8.8e-13 78.2 184 38.6
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.5e-12 77.4 172 36.0
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 1.5e-12 77.4 173 36.4
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 2.0e-12 77.0 175 41.7
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 2.0e-12 77.0 183 39.3
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.6e-12 76.6 157 37.6
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 3.3e-12 76.3 191 36.6
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 4.4e-12 75.9 225 40.9
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 5.7e-12 75.5 171 39.8
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 9.7e-12 74.7 183 38.3
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.7e-11 73.9 210 37.6
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 2.2e-11 73.6 178 36.5
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 2.8e-11 73.2 164 37.8
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 2.8e-11 73.2 172 39.0
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 3.7e-11 72.8 190 37.4
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 4.8e-11 72.4 168 35.7
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 6.3e-11 72.0 164 39.6
Medtr5g022780 Medicago truncatula HOM05D003331 ORTHO05D003264 6.3e-11 72.0 202 38.1
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 8.2e-11 71.6 169 38.5
Rhsim08G0031400 Rhododendron simsii HOM05D003331 ORTHO05D003264 1.1e-10 71.2 173 38.2
PGR083G0975 Punica granatum HOM05D003331 ORTHO05D003264 1.4e-10 70.9 183 35.0
Actinidia17008 Actinidia chinensis HOM05D003331 ORTHO05D003264 2.4e-10 70.1 191 35.6
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 2.4e-10 70.1 164 36.6
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 2.4e-10 70.1 229 33.6
Rhsim10G0207400 Rhododendron simsii HOM05D003331 ORTHO05D003264 3.1e-10 69.7 172 36.6
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 4.1e-10 69.3 181 37.6
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 5.3e-10 68.9 194 36.1
ATR0180G005 Amborella trichopoda HOM05D000531 ORTHO05D003264 9.1e-10 68.2 209 35.9
arahy.Tifrunner.gnm1.ann1.DM1BVQ Arachis hypogaea HOM05D057335 ORTHO05D003264 1.2e-09 67.8 203 38.4
arahy.Tifrunner.gnm1.ann1.FUM12Z Arachis hypogaea HOM05D057335 ORTHO05D003264 1.2e-09 67.8 203 38.4
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 1.2e-09 67.8 175 37.7
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 1.2e-09 67.8 182 35.2
Dinv40128 Davidia involucrata HOM05D003331 ORTHO05D003264 1.2e-09 67.8 134 39.6
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 1.2e-09 67.8 167 39.5
Phvul.002G105700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 1.6e-09 67.4 171 38.6
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 2.0e-09 67.0 164 35.4
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 2.0e-09 67.0 164 35.4
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 2.0e-09 67.0 164 35.4
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 2.0e-09 67.0 173 42.2
Oeu033812.1 Olea europaea HOM05D003331 ORTHO05D003264 2.0e-09 67.0 174 37.4
Psat2g152560 Pisum sativum HOM05D003331 ORTHO05D003264 2.0e-09 67.0 210 34.3
Solyc02g061990.3 Solanum lycopersicum HOM05D003331 ORTHO05D003264 2.7e-09 66.6 189 33.3
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 3.5e-09 66.2 165 38.2
Sabra02G0014700 Salix brachista HOM05D003331 ORTHO05D003264 3.5e-09 66.2 197 37.1
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 4.5e-09 65.9 176 36.4
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 5.9e-09 65.5 191 33.5
PSO541G2637 Papaver somniferum HOM05D003331 ORTHO05D003264 1.0e-08 64.7 229 31.9
A07p03180 Brassica napus HOM05D003331 ORTHO05D003264 1.3e-08 64.3 205 35.1
C07p05420 Brassica napus HOM05D003331 ORTHO05D003264 1.3e-08 64.3 204 34.3
BraA07t28114Z Brassica rapa HOM05D003331 ORTHO05D003264 1.3e-08 64.3 205 35.1
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.7e-08 63.9 215 36.7
Gohir.D05G258000 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.7e-08 63.9 130 39.2
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 2.2e-08 63.5 214 36.9
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 2.2e-08 63.5 166 39.8
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 2.9e-08 63.2 217 35.9
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 2.9e-08 63.2 196 36.2
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 2.9e-08 63.2 185 34.6
BolC7t40942H Brassica oleracea HOM05D003331 ORTHO05D003264 5.0e-08 62.4 204 33.8
PSO675G4415 Papaver somniferum HOM05D003331 ORTHO05D003264 5.0e-08 62.4 230 32.2
EL10Ac6g15165 Beta vulgaris HOM05D003331 ORTHO05D003264 8.5e-08 61.6 171 36.3
PGR031G1921 Punica granatum HOM05D003331 ORTHO05D003264 1.1e-07 61.2 210 33.8
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 1.5e-07 60.8 207 37.2
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 1.5e-07 60.8 216 34.3
SalBow3G1427 Salvia bowleyana HOM05D003331 ORTHO05D003264 2.5e-07 60.1 167 35.9
EL10Ac6g15162 Beta vulgaris HOM05D003331 ORTHO05D003264 4.2e-07 59.3 168 36.9
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 5.5e-07 58.9 212 36.3
Cpa.g.sc6.298 Carica papaya HOM05D003331 ORTHO05D003264 7.2e-07 58.5 178 36.5
Nitab4.5_0000613g0150 Nicotiana tabacum HOM05D000531 ORTHO05D001630 7.2e-07 58.5 206 31.1
BcaC06g36320 Brassica carinata HOM05D003331 ORTHO05D003264 9.4e-07 58.2 203 32.5
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 9.4e-07 58.2 168 36.3
Nitab4.5_0000811g0030 Nicotiana tabacum HOM05D000531 ORTHO05D001630 3.6e-06 56.2 206 31.6
Sc03g0003730 Simmondsia chinensis HOM05D003331 ORTHO05D003264 3.6e-06 56.2 170 33.5
Ah.03g143180 Amaranthus hybridus HOM05D000531 ORTHO05D003264 4.7e-06 55.8 170 35.3
Actinidia27234 Actinidia chinensis HOM05D003331 ORTHO05D003264 6.1e-06 55.5 96 42.7


User provided reference genes

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