Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 4.7e-105 384.8 231 100.0
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 2.6e-95 352.4 235 93.2
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 1.3e-62 243.8 255 63.1
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 7.8e-60 234.6 243 62.6
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 3.0e-59 232.6 241 71.8
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 7.3e-42 174.9 230 50.9
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 7.3e-42 174.9 240 46.7
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 3.1e-40 169.5 244 46.3
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 9.0e-40 167.9 259 44.4
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 1.2e-39 167.5 240 46.7
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 2.9e-38 162.9 260 45.4
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.9e-37 160.2 245 46.5
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 2.7e-36 156.4 243 42.0
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 3.5e-36 156.0 242 45.5
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 7.8e-36 154.8 245 45.7
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 7.8e-36 154.8 270 43.0
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 3.0e-35 152.9 272 42.6
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.9e-35 152.5 262 45.8
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 1.1e-34 151.0 273 44.0
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 1.5e-34 150.6 226 50.0
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.5e-34 150.6 263 43.0
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 2.5e-34 149.8 237 40.9
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 5.6e-34 148.7 262 43.1
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 5.6e-34 148.7 266 41.7
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.3e-33 147.5 233 45.5
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 2.1e-33 146.7 256 44.5
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 5.3e-32 142.1 265 41.1
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 6.9e-32 141.7 266 41.7
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 9.0e-32 141.4 170 52.9
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.2e-31 141.0 249 48.2
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 2.6e-31 139.8 169 52.7
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 4.5e-31 139.0 153 52.3
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 9.9e-31 137.9 170 51.8
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 2.2e-30 136.7 162 54.9
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 1.9e-29 133.7 273 39.2
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 9.3e-29 131.3 166 51.2
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 3.9e-27 125.9 242 41.7
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 8.7e-27 124.8 200 44.0
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.9e-26 123.6 232 43.1
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.4e-24 117.5 200 42.0
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.4e-24 117.5 256 41.0
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 1.4e-24 117.5 213 43.2
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 1.2e-23 114.4 158 51.3
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 2.6e-23 113.2 161 45.3
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 7.6e-23 111.7 170 47.6
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.7e-22 110.5 216 40.7
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.9e-22 109.8 177 46.9
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 3.8e-22 109.4 177 46.9
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 4.9e-22 109.0 237 41.4
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 6.4e-22 108.6 252 38.5
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 2.5e-21 106.7 243 37.0
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 2.5e-21 106.7 236 37.3
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 5.5e-21 105.5 158 46.8
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 5.5e-21 105.5 142 47.2
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 9.3e-21 104.8 135 51.1
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 2.7e-20 103.2 171 46.2
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 2.7e-20 103.2 233 39.9
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 2.3e-19 100.1 130 52.3
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 2.3e-19 100.1 239 37.2
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 3.9e-19 99.4 248 41.9
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 6.7e-19 98.6 167 44.3
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 6.7e-19 98.6 160 45.0
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 1.9e-18 97.1 134 46.3
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 4.3e-18 95.9 231 39.0
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 4.8e-17 92.4 250 38.4
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 6.2e-17 92.0 145 47.6
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 1.4e-16 90.9 266 34.6
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 2.4e-16 90.1 157 43.3
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 5.3e-16 89.0 175 39.4
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 1.5e-15 87.4 222 36.0
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 3.4e-15 86.3 121 47.9
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 1.3e-14 84.3 124 46.8
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 1.7e-14 84.0 124 46.0
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 1.4e-13 80.9 80 61.2
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.9e-13 80.5 243 34.2
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 5.5e-13 79.0 240 34.2
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 2.1e-12 77.0 155 40.6
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 2.1e-12 77.0 230 35.2
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.1e-12 77.0 240 34.6
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 1.8e-11 73.9 100 48.0
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 5.1e-11 72.4 164 42.1
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 1.1e-10 71.2 47 70.2
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 1.5e-10 70.9 47 70.2
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 1.5e-10 70.9 47 70.2
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 1.5e-10 70.9 47 70.2
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 1.9e-10 70.5 47 66.0
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 3.3e-10 69.7 154 40.3
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 5.7e-10 68.9 47 68.1
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 2.2e-09 67.0 47 63.8
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 2.8e-09 66.6 45 71.1
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 4.8e-09 65.9 47 63.8
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 8.2e-09 65.1 47 63.8
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 1.1e-08 64.7 47 63.8
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 1.1e-08 64.7 47 63.8
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 1.1e-08 64.7 56 55.4
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.8e-08 63.9 96 43.8
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 2.4e-08 63.5 233 29.6
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 2.4e-08 63.5 46 60.9
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 5.3e-08 62.4 150 39.3
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.9e-08 62.0 94 37.2
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.9e-08 62.0 94 37.2
Thhalv10008606m.g Eutrema salsugineum HOM05D009961 ORTHO05D008483 9.0e-08 61.6 48 62.5
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 9.0e-08 61.6 131 38.2
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 9.0e-08 61.6 130 33.1
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 1.2e-07 61.2 47 57.4
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 1.2e-07 61.2 48 60.4
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 1.5e-07 60.8 96 36.5
Ah.11g039950 Amaranthus hybridus HOM05D047386 ORTHO05D008483 2.0e-07 60.5 97 47.4
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 3.4e-07 59.7 48 60.4
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 3.4e-07 59.7 97 36.1
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 3.4e-07 59.7 97 36.1
BcaC07g39017 Brassica carinata HOM05D009961 ORTHO05D008483 3.4e-07 59.7 48 58.3
C08p19900 Brassica napus HOM05D009961 ORTHO05D008483 3.4e-07 59.7 48 58.3
BolC8t49628H Brassica oleracea HOM05D009961 ORTHO05D008483 3.4e-07 59.7 48 58.3
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.4e-07 59.7 94 36.2
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 3.4e-07 59.7 94 37.2
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 4.5e-07 59.3 166 30.7
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 4.5e-07 59.3 96 35.4
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 5.9e-07 58.9 103 35.9
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.3e-06 57.8 127 34.6
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.2e-06 57.0 157 36.3
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.9e-06 56.6 130 31.5
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 2.9e-06 56.6 137 38.7
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.9e-06 56.6 130 29.2
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 3.8e-06 56.2 96 31.2
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.0e-06 55.8 94 36.2
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 5.0e-06 55.8 133 37.6
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.5e-06 55.5 130 31.5
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 6.5e-06 55.5 94 37.2
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 8.5e-06 55.1 113 34.5
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.5e-06 55.1 94 35.1
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 8.5e-06 55.1 94 35.1


User provided reference genes

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