Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013973 Carpinus fangiana HOM05D000029 ORTHO05D000854 2.0e-100 370.9 662 100.0
Haze_22657 Corylus avellana HOM05D000029 ORTHO05D000854 3.3e-55 220.7 662 87.0
Prupe.1G363300 Prunus persica HOM05D000029 ORTHO05D000854 1.8e-37 161.8 276 71.4
Cfa013972 Carpinus fangiana HOM05D000029 ORTHO05D000854 2.6e-31 141.4 271 54.2
THA.LOC104813786 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 5.7e-31 140.2 248 44.4
CiPaw.07G147700 Carya illinoinensis HOM05D000029 ORTHO05D008832 1.3e-30 139.0 214 54.2
Atru.chr13.260 Acer truncatum HOM05D000029 ORTHO05D000854 1.7e-30 138.7 277 68.6
Thecc.08G046900 Theobroma cacao HOM05D000029 ORTHO05D000854 1.4e-29 135.6 279 51.3
Cfa013974 Carpinus fangiana HOM05D000029 ORTHO05D000854 5.0e-27 127.1 275 65.8
Migut.C00856 Erythranthe guttata HOM05D000029 ORTHO05D000854 5.0e-27 127.1 250 46.8
CiPaw.07G147600 Carya illinoinensis HOM05D000029 ORTHO05D000854 1.1e-26 125.9 96 65.6
Lj4C798T10 Lonicera japonica HOM05D000029 ORTHO05D000854 2.5e-26 124.8 243 48.6
Peaxi162Scf00553g00620 Petunia axillaris HOM05D000029 ORTHO05D000854 2.5e-26 124.8 276 50.7
RcHm_v2.0_Chr2g0120661 Rosa chinensis HOM05D000029 ORTHO05D000854 2.5e-26 124.8 244 57.8
RcHm_v2.0_Chr2g0119001 Rosa chinensis HOM05D000029 ORTHO05D000854 3.3e-26 124.4 244 61.5
Duzib116G0141 Durio zibethinus HOM05D000029 ORTHO05D000854 5.6e-26 123.6 271 56.5
Gohir.D05G188300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 5.6e-26 123.6 231 43.7
TWI12G1049 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 7.2e-26 123.2 272 61.8
QL02p012090 Quercus lobata HOM05D000029 ORTHO05D000854 1.6e-25 122.1 170 60.0
PGR031G0445 Punica granatum HOM05D000029 ORTHO05D000854 2.1e-25 121.7 266 49.6
TWI56G1368 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 2.1e-25 121.7 280 48.9
COL.COLO4_26126 Corchorus olitorius HOM05D000029 ORTHO05D000854 4.7e-25 120.6 271 45.4
CSS0049239 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.8e-24 118.6 206 49.0
THA.LOC104811419 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 1.8e-24 118.6 249 42.2
CSS0021294 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 2.3e-24 118.2 203 55.2
Ciclev10000156m.g Citrus clementina HOM05D000029 ORTHO05D000854 5.2e-24 117.1 218 60.6
Dinv39533 Davidia involucrata HOM05D000029 ORTHO05D000854 6.8e-24 116.7 93 62.4
QL02p012056 Quercus lobata HOM05D000029 ORTHO05D000854 6.8e-24 116.7 98 59.2
Cc10_g01470 Coffea canephora HOM05D000029 ORTHO05D000854 1.5e-23 115.5 239 64.4
Actinidia37938 Actinidia chinensis HOM05D000029 ORTHO05D000854 2.6e-23 114.8 155 41.3
Hma1.2p1_0733F.1_g210220 Hydrangea macrophylla HOM05D000029 ORTHO05D000854 2.6e-23 114.8 246 39.0
Nitab4.5_0003349g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 7.5e-23 113.2 275 56.0
Oeu061974.1 Olea europaea HOM05D000029 ORTHO05D000854 7.5e-23 113.2 278 59.4
PSO541G5153 Papaver somniferum HOM05D000029 ORTHO05D000854 7.5e-23 113.2 252 41.7
QL02p012034 Quercus lobata HOM05D000029 ORTHO05D000854 9.8e-23 112.8 99 56.6
Dinv31865 Davidia involucrata HOM05D000029 ORTHO05D000854 1.3e-22 112.5 180 38.3
Duzib041G0705 Durio zibethinus HOM05D000029 ORTHO05D000854 1.3e-22 112.5 178 41.6
AL2G35810 Arabidopsis lyrata HOM05D000029 ORTHO05D000854 1.7e-22 112.1 227 43.2
Manes.05G145600 Manihot esculenta HOM05D000029 ORTHO05D000854 1.7e-22 112.1 227 49.3
Sp5g30940 Schrenkiella parvula HOM05D000029 ORTHO05D000854 1.7e-22 112.1 219 42.9
Gorai.009G269700 Gossypium raimondii HOM05D000029 ORTHO05D000854 2.2e-22 111.7 165 39.4
TAR625G0714 Trochodendron aralioides HOM05D000029 ORTHO05D000854 2.2e-22 111.7 250 50.4
CSS0031229 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 2.9e-22 111.3 277 49.8
PSO675G7340 Papaver somniferum HOM05D000029 ORTHO05D000854 3.7e-22 110.9 252 49.6
SalBow7G3307 Salvia bowleyana HOM05D000029 ORTHO05D000854 4.9e-22 110.5 242 57.9
Migut.N03171 Erythranthe guttata HOM05D000029 ORTHO05D000854 6.4e-22 110.2 245 53.9
Lj3g0005112 Lotus japonicus HOM05D000029 ORTHO05D000854 2.4e-21 108.2 247 53.4
TPR.G30515 Trifolium pratense HOM05D000029 ORTHO05D000854 5.4e-21 107.1 241 52.7
BcaC08g47324 Brassica carinata HOM05D000029 ORTHO05D000854 7.0e-21 106.7 220 40.9
A07p41350 Brassica napus HOM05D000029 ORTHO05D000854 7.0e-21 106.7 213 41.8
C06p49770 Brassica napus HOM05D000029 ORTHO05D000854 7.0e-21 106.7 220 40.9
BolC6t40016H Brassica oleracea HOM05D000029 ORTHO05D000854 7.0e-21 106.7 220 40.9
BraA07t31668Z Brassica rapa HOM05D000029 ORTHO05D000854 7.0e-21 106.7 213 41.8
PGSC0003DMG400009941 Solanum tuberosum HOM05D000029 ORTHO05D000854 7.0e-21 106.7 274 55.5
Aa31LG4G6020 Aethionema arabicum HOM05D000029 ORTHO05D000854 1.2e-20 105.9 223 41.7
Gohir.D02G098300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.2e-20 105.9 178 57.3
SalBow8G4622 Salvia bowleyana HOM05D000029 ORTHO05D000854 1.2e-20 105.9 249 57.0
Thhalv10018069m.g Eutrema salsugineum HOM05D000029 ORTHO05D000854 1.6e-20 105.5 222 41.9
Gohir.A05G256700 Gossypium hirsutum HOM05D000029 ORTHO05D000854 3.5e-20 104.4 142 64.1
Gorai.009G193600 Gossypium raimondii HOM05D000029 ORTHO05D000854 4.6e-20 104.0 98 57.1
Rhsim07G0250600 Rhododendron simsii HOM05D000029 ORTHO05D000854 4.6e-20 104.0 230 61.3
RcHm_v2.0_Chr6g0303151 Rosa chinensis HOM05D000029 ORTHO05D000854 4.6e-20 104.0 226 61.1
CANSAT25G3014 Cannabis sativa HOM05D000029 ORTHO05D000854 7.8e-20 103.2 149 59.7
Gohir.A05G185500 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.0e-19 102.8 98 56.1
Gorai.005G112100 Gossypium raimondii HOM05D000029 ORTHO05D000854 1.3e-19 102.4 178 56.7
Solyc04g081590.4 Solanum lycopersicum HOM05D000029 ORTHO05D000854 1.3e-19 102.4 275 56.4
AT1G75820 Arabidopsis thaliana HOM05D000029 ORTHO05D000854 1.7e-19 102.1 226 48.7
Rhsim11G0137300 Rhododendron simsii HOM05D000029 ORTHO05D000854 2.3e-19 101.7 261 59.4
Ah.14g088500 Amaranthus hybridus HOM05D006759 ORTHO05D008633 5.0e-19 100.5 71 63.4
Carub.0002s2267 Capsella rubella HOM05D000029 ORTHO05D000854 5.0e-19 100.5 222 49.1
Lalb_Chr01g0002311 Lupinus albus HOM05D000029 ORTHO05D000854 5.0e-19 100.5 247 59.5
Nn5g30753 Nelumbo nucifera HOM05D000029 ORTHO05D000854 5.0e-19 100.5 284 53.5
Potri.005G241500 Populus trichocarpa HOM05D000029 ORTHO05D000854 5.0e-19 100.5 181 65.2
Sabra05G0187000 Salix brachista HOM05D000029 ORTHO05D013250 5.0e-19 100.5 181 59.1
Cpa.g.sc26.309 Carica papaya HOM05D000029 ORTHO05D000854 8.6e-19 99.8 143 62.9
MD15G1010800 Malus domestica HOM05D000029 ORTHO05D000854 1.1e-18 99.4 272 63.2
CARHR069240 Cardamine hirsuta HOM05D000029 ORTHO05D000854 1.5e-18 99.0 226 40.3
Gohir.A02G082800 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.5e-18 99.0 155 61.9
Nn6g32016 Nelumbo nucifera HOM05D000029 ORTHO05D000854 1.9e-18 98.6 235 57.9
MD08G1010700 Malus domestica HOM05D000029 ORTHO05D000854 3.3e-18 97.8 271 64.2
GSVIVG01009941001 Vitis vinifera HOM05D000029 ORTHO05D000854 4.3e-18 97.4 128 74.2
Actinidia00278 Actinidia chinensis HOM05D000029 ORTHO05D000854 5.6e-18 97.1 193 51.8
ClCG05G018180 Citrullus lanatus HOM05D000029 ORTHO05D000854 5.6e-18 97.1 184 41.8
Sabra02G0016200 Salix brachista HOM05D000029 ORTHO05D000854 5.6e-18 97.1 177 67.2
CAN.G311.45 Capsicum annuum HOM05D000029 ORTHO05D000854 7.3e-18 96.7 241 53.5
MELO3C003743.2 Cucumis melo HOM05D000029 ORTHO05D000854 9.5e-18 96.3 266 50.0
TAR381G0556 Trochodendron aralioides HOM05D000029 ORTHO05D000854 1.2e-17 95.9 98 53.1
TAR381G0687 Trochodendron aralioides HOM05D000029 ORTHO05D000854 1.2e-17 95.9 98 53.1
Potri.002G019900 Populus trichocarpa HOM05D000029 ORTHO05D000854 1.6e-17 95.5 147 63.9
vmacro04366 Vaccinium macrocarpon HOM05D000029 ORTHO05D000854 1.6e-17 95.5 92 53.3
FvH4_2g38230 Fragaria vesca HOM05D000029 ORTHO05D000854 2.1e-17 95.1 226 61.5
MBI09_g22807_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 2.1e-17 95.1 274 50.7
Lj4C21T5 Lonicera japonica HOM05D000029 ORTHO05D000854 4.7e-17 94.0 194 45.9
Psat7g183240 Pisum sativum HOM05D000029 ORTHO05D000854 6.2e-17 93.6 244 43.0
Sed0018613 Sechium edule HOM05D000029 ORTHO05D000854 6.2e-17 93.6 228 58.8
Sc03g0007380 Simmondsia chinensis HOM05D000029 ORTHO05D000854 8.0e-17 93.2 151 60.3
DCAR_014030 Daucus carota HOM05D000029 ORTHO05D008832 1.8e-16 92.0 203 42.4
Sc03g0007390 Simmondsia chinensis HOM05D017028 ORTHO05D016971 1.8e-16 92.0 92 51.1
Prupe.6G163000 Prunus persica HOM05D000029 ORTHO05D000854 2.3e-16 91.7 226 60.6
BcaC08g47071 Brassica carinata HOM05D000029 ORTHO05D008832 3.1e-16 91.3 69 62.3
Ca_20907_v3 Cicer arietinum L. HOM05D000029 ORTHO05D000854 5.2e-16 90.5 146 45.9
RcHm_v2.0_Chr2g0119031 Rosa chinensis HOM05D000029 ORTHO05D000854 5.2e-16 90.5 245 52.2
FAN15G2748 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.8e-16 90.1 226 56.2
Oeu014167.2 Olea europaea HOM05D000029 ORTHO05D000854 2.6e-15 88.2 146 57.5
Sc03g0007400 Simmondsia chinensis HOM05D017028 ORTHO05D016971 2.6e-15 88.2 95 48.4
Sc15g0004850 Simmondsia chinensis HOM05D000029 ORTHO05D000854 2.6e-15 88.2 213 60.6
ECA238G2525 Erigeron canadensis HOM05D000029 ORTHO05D000854 4.4e-15 87.4 253 51.0
FAN20G1462 Fragaria x ananassa HOM05D000029 ORTHO05D000854 4.4e-15 87.4 148 57.4
FAN27G2151 Fragaria x ananassa HOM05D000029 ORTHO05D000854 7.5e-15 86.7 93 50.5
DCAR_022991 Daucus carota HOM05D000029 ORTHO05D000854 9.8e-15 86.3 226 38.5
Lalb_Chr03g0025491 Lupinus albus HOM05D000029 ORTHO05D000854 9.8e-15 86.3 273 56.4
Ciclev10003935m.g Citrus clementina HOM05D000029 ORTHO05D000854 1.3e-14 85.9 191 39.8
Medtr4g070950 Medicago truncatula HOM05D000029 ORTHO05D000854 1.3e-14 85.9 247 53.0
Sopen04g035200 Solanum pennellii HOM05D000029 ORTHO05D000854 1.3e-14 85.9 241 58.5
CsaV3_3G045960 Cucumis sativus L. HOM05D000029 ORTHO05D000854 1.7e-14 85.5 169 42.0
Gohir.D05G258350 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.7e-14 85.5 152 33.6
Glyma.11G114100 Glycine max HOM05D000029 ORTHO05D000854 4.9e-14 84.0 96 42.7
SGA_v2.0_scaffold92G28209 Striga asiatica HOM05D000029 ORTHO05D000854 8.3e-14 83.2 150 56.7
Eucgr.H00964 Eucalyptus grandis HOM05D000029 ORTHO05D000854 1.1e-13 82.8 89 50.6
VMungo1127G1012 Vigna mungo HOM05D000029 ORTHO05D000854 1.9e-13 82.0 156 52.6
SGA_v2.0_scaffold19G08549 Striga asiatica HOM05D000029 ORTHO05D000854 2.4e-13 81.6 94 46.8
HanXRQChr14g0431061 Helianthus annuus HOM05D000029 ORTHO05D000854 3.2e-13 81.3 153 53.6
Glyma.12G040000 Glycine max HOM05D000029 ORTHO05D000854 5.4e-13 80.5 96 42.7
Glyma.11G114200 Glycine max HOM05D000029 ORTHO05D000854 1.2e-12 79.3 78 47.4
Lsat_1_v5_gn_8_30001 Lactuca sativa HOM05D000029 ORTHO05D000854 1.6e-12 79.0 183 50.8
Manes.11G162200 Manihot esculenta HOM05D000029 ORTHO05D000854 1.6e-12 79.0 94 52.1
Medtr4g070970 Medicago truncatula HOM05D000029 ORTHO05D000854 1.6e-12 79.0 204 58.3
arahy.Tifrunner.gnm1.ann1.8BA7G9 Arachis hypogaea HOM05D000029 ORTHO05D000854 2.0e-12 78.6 162 32.7
arahy.Tifrunner.gnm1.ann1.97EMNK Arachis hypogaea HOM05D000029 ORTHO05D000854 2.0e-12 78.6 162 32.7
Phvul.011G042100 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 2.0e-12 78.6 93 46.2
HPP92_008346 Vanilla planifolia HOM05D000029 ORTHO05D000854 2.7e-12 78.2 70 52.9
Phvul.011G042000 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 3.5e-12 77.8 185 47.0
Lsat_1_v5_gn_2_12620 Lactuca sativa HOM05D000029 ORTHO05D000854 1.3e-11 75.9 133 61.7
CDE02G0257 Ceratophyllum demersum HOM05D000029 ORTHO05D000854 2.3e-11 75.1 65 56.9
ECA238G3421 Erigeron canadensis HOM05D000029 ORTHO05D000854 8.6e-11 73.2 103 45.6
HanXRQChr12g0366831 Helianthus annuus HOM05D000029 ORTHO05D000854 8.6e-11 73.2 91 38.5
AUR62041480 Chenopodium quinoa HOM05D000029 ORTHO05D000854 2.8e-09 68.2 99 46.5
Eucgr.D00508 Eucalyptus grandis HOM05D000029 ORTHO05D000854 6.2e-09 67.0 89 43.8
Lsat_1_v5_gn_8_30160 Lactuca sativa HOM05D000029 ORTHO05D000854 8.1e-09 66.6 93 44.1
Atru.chr13.263 Acer truncatum HOM05D000029 ORTHO05D000854 1.1e-08 66.2 176 67.0
ECA238G1034 Erigeron canadensis HOM05D000029 ORTHO05D000854 1.4e-08 65.9 63 52.4
Hund05177 Selenicereus undatus HOM05D000029 ORTHO05D000854 1.8e-08 65.5 78 43.6
Eucgr.H00963 Eucalyptus grandis HOM05D000029 ORTHO05D000854 5.2e-08 63.9 77 44.2
AUR62040553 Chenopodium quinoa HOM05D000029 ORTHO05D000854 6.8e-08 63.5 71 45.1
CDE04G0785 Ceratophyllum demersum HOM05D000029 ORTHO05D000854 8.9e-08 63.2 59 54.2
Ah.11g039930 Amaranthus hybridus HOM05D000029 ORTHO05D000854 1.2e-07 62.8 93 36.6
ECA238G2013 Erigeron canadensis HOM05D000029 ORTHO05D000854 2.0e-07 62.0 121 55.4
Aqoxy6G02186 Aquilegia oxysepala HOM05D000029 ORTHO05D000854 3.4e-07 61.2 93 34.4
Os06g0717200 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D000854 3.4e-07 61.2 75 45.3
Zm00001eb009640 Zea mays HOM05D000029 ORTHO05D000854 5.8e-07 60.5 248 37.1
Haze_22658 Corylus avellana HOM05D000029 ORTHO05D000854 1.3e-06 59.3 61 50.8
MD05G1139200 Malus domestica HOM05D000029 ORTHO05D000854 6.4e-06 57.0 145 50.3


User provided reference genes

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