Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 1.6e-208 729.2 359 100.0
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 3.5e-192 674.9 420 82.6
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 1.9e-166 589.3 375 78.9
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 7.4e-158 560.8 381 73.0
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 5.8e-155 551.2 375 73.1
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 4.6e-152 541.6 383 69.7
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 1.8e-151 539.7 382 69.9
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 1.5e-150 536.6 383 69.5
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 1.3e-149 533.5 380 67.6
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 4.8e-149 531.6 382 68.1
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 1.1e-148 530.4 381 68.8
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 3.1e-148 528.9 381 69.0
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 1.5e-147 526.6 381 68.8
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 7.7e-147 524.2 380 68.2
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 7.7e-147 524.2 382 69.9
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 1.9e-145 519.6 370 68.6
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 3.2e-145 518.8 367 70.6
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 9.4e-145 517.3 383 68.7
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 9.4e-145 517.3 373 67.6
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 4.6e-144 515.0 382 67.3
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 7.9e-144 514.2 370 67.3
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 8.8e-143 510.8 369 68.8
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 1.5e-142 510.0 369 68.6
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 3.3e-142 508.8 373 65.1
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 1.7e-141 506.5 381 64.8
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 2.2e-141 506.1 374 67.1
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 8.2e-141 504.2 370 68.6
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 3.1e-140 502.3 366 68.0
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 6.9e-140 501.1 372 67.5
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 2.0e-139 499.6 381 65.4
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 2.0e-139 499.6 373 65.1
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 5.0e-138 495.0 378 64.6
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 1.4e-137 493.4 379 64.4
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 4.2e-137 491.9 359 68.8
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 4.2e-137 491.9 359 68.8
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 1.6e-136 490.0 378 64.8
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 7.9e-136 487.6 374 65.5
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.3e-135 486.1 378 63.8
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.3e-135 486.1 378 63.8
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 2.3e-135 486.1 379 64.4
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 5.1e-135 485.0 379 64.4
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 6.7e-135 484.6 380 63.9
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 1.5e-134 483.4 374 63.9
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 2.6e-134 482.6 379 64.4
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 5.7e-134 481.5 360 66.1
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 1.1e-132 477.2 413 57.9
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 1.4e-132 476.9 379 64.4
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 1.8e-132 476.5 379 63.9
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 2.4e-132 476.1 349 67.6
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 3.1e-132 475.7 377 62.3
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 4.1e-132 475.3 379 63.9
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 9.1e-132 474.2 382 61.3
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 9.1e-132 474.2 398 61.3
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 9.1e-132 474.2 377 61.8
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 1.5e-131 473.4 373 63.5
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 2.0e-131 473.0 369 65.3
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 5.9e-131 471.5 373 63.3
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 2.9e-130 469.2 376 61.2
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 5.0e-130 468.4 373 62.7
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 5.0e-130 468.4 378 62.7
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 1.4e-129 466.8 376 62.0
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 3.2e-129 465.7 370 63.2
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 5.5e-129 464.9 378 62.4
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 9.4e-129 464.2 371 62.3
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 9.4e-129 464.2 369 61.8
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 1.2e-128 463.8 373 61.9
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 2.1e-128 463.0 373 62.2
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 6.1e-128 461.5 364 63.7
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 1.0e-127 460.7 385 60.0
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 1.0e-127 460.7 377 60.5
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 3.9e-127 458.8 383 59.3
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 5.2e-127 458.4 374 62.0
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 5.2e-127 458.4 374 62.0
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 1.5e-126 456.8 385 60.0
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 3.3e-126 455.7 376 60.4
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 5.7e-126 454.9 373 60.3
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 2.2e-125 453.0 365 63.0
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 3.7e-125 452.2 385 59.7
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 5.3e-124 448.4 373 61.4
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 7.0e-124 448.0 373 61.1
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 2.0e-123 446.4 378 60.6
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.7e-122 443.4 358 61.5
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 6.5e-122 441.4 373 60.3
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 8.8e-119 431.0 320 67.2
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 4.4e-118 428.7 373 56.8
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 7.0e-116 421.4 352 58.8
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 2.0e-115 419.9 369 57.5
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 5.5e-113 411.8 321 64.8
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 7.2e-113 411.4 375 56.8
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 8.0e-112 407.9 364 59.3
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 3.0e-111 406.0 305 66.6
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 3.4e-110 402.5 373 52.8
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 3.4e-110 402.5 381 53.3
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 1.8e-108 396.7 360 56.1
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 2.7e-107 392.9 383 55.9
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 1.9e-105 386.7 280 70.7
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 3.3e-105 386.0 298 65.1
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 5.5e-105 385.2 371 53.1
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 8.0e-104 381.3 401 51.1
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 8.9e-103 377.9 259 73.0
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 9.8e-102 374.4 350 56.0
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 2.2e-101 373.2 289 64.7
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 4.0e-95 352.4 372 54.0
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 2.3e-87 326.6 306 56.2
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 1.2e-86 324.3 225 72.4
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 2.0e-86 323.6 361 45.2
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 5.8e-86 322.0 366 45.9
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 8.3e-85 318.2 392 41.1
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 8.3e-85 318.2 283 58.7
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 6.0e-83 312.0 370 42.4
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 2.3e-82 310.1 330 50.3
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 1.1e-81 307.8 255 61.6
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 2.0e-70 270.4 187 67.4
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 4.4e-70 269.2 218 61.5
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 2.0e-62 243.8 387 34.4
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 5.6e-57 225.7 176 61.9
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 1.6e-43 181.0 149 62.4
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 2.5e-41 173.7 164 55.5
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 2.2e-32 144.1 86 82.6
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 2.0e-30 137.5 181 45.3
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 2.6e-30 137.1 109 60.6
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 7.7e-30 135.6 111 57.7
ClCG05G018230 Citrullus lanatus HOM05D006392 ORTHO05D008010 1.6e-11 74.7 46 69.6
Cre09.g401367 Chlamydomonas reinhardtii HOM05D006392 ORTHO05D008010 3.9e-10 70.1 138 34.8
Zm00001eb340150 Zea mays HOM05D006392 ORTHO05D008010 1.1e-07 62.0 56 50.0


User provided reference genes

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