Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.1e-168 596.7 320 100.0
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 4.4e-146 521.5 315 89.5
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.3e-100 370.5 316 66.1
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.0e-97 360.9 316 65.5
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.8e-92 342.8 315 61.9
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 9.7e-77 291.2 327 52.0
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 3.7e-76 289.3 323 51.4
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.2e-74 284.3 326 49.7
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.2e-71 274.2 316 50.0
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.6e-71 273.9 333 48.0
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.6e-69 266.5 326 46.6
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 3.3e-69 266.2 319 46.4
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 5.7e-69 265.4 322 47.2
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.2e-68 263.5 318 49.7
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 4.8e-68 262.3 326 47.5
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 6.3e-68 261.9 311 48.2
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.4e-67 260.0 322 45.7
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.5e-66 255.8 322 46.9
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.9e-66 255.4 322 46.9
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.9e-66 255.4 322 45.3
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.7e-66 255.0 322 46.6
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.0e-65 254.6 322 45.0
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.3e-65 254.2 306 48.4
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.1e-64 251.1 300 50.0
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.5e-64 250.8 317 48.3
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 1.6e-63 247.3 329 45.9
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 6.1e-63 245.4 306 47.7
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.5e-61 240.7 330 45.8
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.5e-61 240.7 322 46.9
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 4.4e-61 239.2 309 47.2
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 2.8e-60 236.5 322 44.7
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.1e-59 234.6 324 46.0
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 2.4e-59 233.4 317 46.4
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 3.1e-59 233.0 312 46.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 5.4e-59 232.3 330 45.5
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 7.0e-59 231.9 309 47.9
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.2e-58 231.1 336 43.5
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.7e-58 229.9 306 44.4
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 6.5e-57 225.3 300 43.3
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.1e-56 224.6 318 45.6
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 4.2e-56 222.6 298 47.3
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 4.2e-56 222.6 324 45.7
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.5e-56 222.2 318 42.5
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.2e-56 221.9 327 41.6
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.2e-55 221.1 324 42.0
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.6e-55 220.7 290 44.8
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 2.1e-55 220.3 320 41.2
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 2.8e-55 219.9 311 43.4
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.8e-55 219.9 327 42.5
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 4.7e-55 219.2 315 43.5
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 6.1e-55 218.8 320 40.6
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.3e-54 216.9 325 41.5
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 5.2e-54 215.7 320 40.6
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 1.2e-53 214.5 323 45.2
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.5e-53 214.2 327 40.7
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.0e-53 213.8 301 42.2
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 2.8e-52 209.9 301 44.5
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 2.8e-52 209.9 294 40.8
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.1e-51 208.0 313 41.5
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.4e-51 207.6 315 41.6
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 2.4e-51 206.8 313 41.5
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 3.1e-51 206.5 300 40.3
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 5.4e-51 205.7 316 43.4
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 5.4e-51 205.7 314 42.7
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 9.2e-51 204.9 294 40.5
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 1.5e-48 197.6 316 40.8
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.5e-48 196.8 315 39.0
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 4.3e-48 196.1 214 52.8
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 7.3e-48 195.3 322 42.2
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.6e-47 194.1 316 40.5
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.8e-47 193.4 312 41.3
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 4.7e-47 192.6 316 41.1
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 3.0e-46 189.9 304 40.8
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 4.0e-46 189.5 314 40.8
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 5.2e-46 189.1 316 41.5
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 6.8e-46 188.7 313 39.0
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 2.0e-45 187.2 323 40.9
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 3.4e-45 186.4 316 39.2
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 3.4e-45 186.4 306 41.8
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 2.2e-44 183.7 341 38.7
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 2.2e-44 183.7 310 40.0
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 2.9e-44 183.3 316 38.9
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 8.3e-44 181.8 324 38.0
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 3.2e-43 179.9 307 39.7
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 3.2e-43 179.9 325 41.2
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 4.1e-43 179.5 325 37.5
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.4e-43 179.1 270 38.9
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 5.4e-43 179.1 319 40.1
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 5.4e-43 179.1 310 41.6
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 9.2e-43 178.3 303 37.6
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 2.7e-42 176.8 341 37.8
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.6e-42 176.0 310 39.0
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 5.9e-42 175.6 321 35.8
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 5.0e-41 172.6 319 36.1
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.1e-40 171.4 316 37.3
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 2.5e-40 170.2 314 37.6
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 2.5e-40 170.2 312 38.1
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 4.3e-40 169.5 316 37.3
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.2e-39 167.9 282 37.6
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 2.8e-39 166.8 334 36.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.8e-38 164.1 311 34.7
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 5.2e-38 162.5 271 38.4
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 2.0e-37 160.6 327 37.3
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.4e-37 159.5 302 36.8
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 5.8e-37 159.1 326 37.4
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 9.8e-37 158.3 305 33.8
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.1e-35 154.8 227 42.3
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 3.2e-35 153.3 297 34.7
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 5.4e-35 152.5 312 34.3
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 3.5e-34 149.8 291 36.8
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.1e-32 144.8 284 32.4
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.5e-32 144.4 302 34.1
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 3.3e-32 143.3 300 33.7
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 2.1e-31 140.6 309 36.6
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.1e-30 138.3 182 47.3
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.2e-29 134.8 231 36.4
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 3.2e-27 126.7 337 32.9
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 7.1e-27 125.6 315 33.3
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.2e-26 124.8 227 37.4
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 1.7e-25 120.9 260 33.5
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 3.0e-25 120.2 317 33.8
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.1e-22 111.7 321 28.7
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 2.0e-21 107.5 234 35.5
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 3.4e-21 106.7 165 44.8
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 9.9e-21 105.1 114 49.1
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 1.3e-20 104.8 198 35.9
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 8.4e-20 102.1 314 30.6
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 7.1e-19 99.0 229 32.3
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 9.2e-19 98.6 297 31.0
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 3.5e-18 96.7 324 27.2
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 6.0e-18 95.9 127 46.5
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 7.8e-18 95.5 105 46.7
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.5e-16 90.5 224 27.7
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 5.6e-16 89.4 281 29.2
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.6e-15 87.8 216 30.1
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.3e-12 78.2 274 23.4
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.6e-10 71.2 295 27.8
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 2.3e-09 67.4 233 24.9
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 3.9e-09 66.6 286 22.0
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 1.1e-06 58.5 56 55.4
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.1e-06 57.0 162 30.2
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 4.0e-06 56.6 141 31.9


User provided reference genes

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