Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 0.0e+00 1321.2 686 100.0
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 0.0e+00 1257.7 695 94.4
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 4.0e-245 851.7 771 64.3
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 1.3e-208 730.3 657 65.8
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 1.9e-186 656.8 742 54.9
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 4.1e-165 585.9 774 47.4
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 6.5e-163 578.6 756 50.5
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 2.1e-153 547.0 799 46.1
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 7.5e-151 538.5 770 46.8
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 8.6e-147 525.0 771 45.3
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 1.6e-145 520.8 811 45.1
Dinv39514 Davidia involucrata HOM05D007378 ORTHO05D007577 4.0e-144 516.2 698 48.9
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 6.4e-142 508.8 804 44.4
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 4.3e-138 496.1 803 44.0
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 1.1e-136 491.5 782 45.8
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 1.4e-136 491.1 684 49.0
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 1.1e-133 481.5 792 44.9
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 5.6e-130 469.2 802 43.1
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 5.4e-125 452.6 771 39.9
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 7.1e-125 452.2 734 44.4
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 2.1e-124 450.7 765 40.3
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 2.3e-123 447.2 796 44.2
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 5.1e-123 446.0 699 44.9
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 8.6e-123 445.3 637 46.8
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 1.2e-121 441.4 716 44.6
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 1.1e-120 438.3 744 44.1
FAN15G3724 Fragaria x ananassa HOM05D007378 ORTHO05D007577 7.6e-119 432.2 804 38.4
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 1.6e-116 424.5 754 43.9
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 7.8e-116 422.2 556 51.4
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 1.7e-115 421.0 720 43.5
FAN27G0575 Fragaria x ananassa HOM05D007378 ORTHO05D007577 3.0e-115 420.2 772 39.0
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 2.1e-113 414.1 800 41.0
TAR381G0696 Trochodendron aralioides HOM05D007378 ORTHO05D007577 5.2e-112 409.5 672 42.3
FAN20G0665 Fragaria x ananassa HOM05D007378 ORTHO05D007577 9.9e-111 405.2 718 39.3
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 7.3e-106 389.0 807 39.4
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 4.3e-90 336.7 727 38.9
MBI05_g30742_MAGBIO Magnolia biondii HOM05D007378 ORTHO05D007577 9.0e-88 328.9 776 37.9
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 1.1e-85 322.0 742 36.9
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 9.3e-85 318.9 716 37.7
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 2.1e-84 317.8 758 36.7
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 1.0e-83 315.5 742 36.3
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 1.0e-83 315.5 738 36.6
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 3.0e-83 313.9 741 36.0
VMungo0647G1459 Vigna mungo HOM05D007378 ORTHO05D007577 3.0e-83 313.9 722 36.1
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 7.4e-82 309.3 732 37.0
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 3.7e-81 307.0 648 38.6
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 3.7e-81 307.0 776 36.3
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 3.7e-81 307.0 703 37.0
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 3.4e-79 300.4 715 35.9
Phvul.001G006800 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 2.9e-78 297.4 720 36.5
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 5.0e-78 296.6 714 35.4
Rhsim07G0247100 Rhododendron simsii HOM05D007378 ORTHO05D007577 3.9e-75 287.0 697 35.9
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 1.4e-72 278.5 762 34.3
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 1.3e-70 271.9 741 32.3
vmacro21724 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 1.9e-69 268.1 569 39.7
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 2.7e-68 264.2 734 33.0
Cc10_g01700 Coffea canephora HOM05D007378 ORTHO05D007577 3.7e-65 253.8 702 32.9
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 1.1e-64 252.3 733 33.0
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 1.4e-64 251.9 707 34.1
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 1.8e-64 251.5 646 35.8
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 1.3e-62 245.4 724 31.4
PGR031G0679 Punica granatum HOM05D007378 ORTHO05D007577 6.5e-62 243.0 728 33.4
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 2.1e-60 238.0 760 32.0
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 6.1e-60 236.5 310 49.0
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 6.1e-60 236.5 721 33.3
Lalb_Chr08g0246161 Lupinus albus HOM05D007378 ORTHO05D007577 1.8e-59 235.0 638 34.6
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 4.4e-58 230.3 725 33.2
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 2.2e-57 228.0 683 31.6
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 3.7e-57 227.3 680 32.9
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 4.5e-55 220.3 304 50.0
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 5.9e-55 219.9 412 38.1
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 5.9e-55 219.9 739 30.4
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 5.9e-55 219.9 708 30.4
Aqoxy5G01785 Aquilegia oxysepala HOM05D007378 ORTHO05D007577 7.7e-55 219.5 709 32.9
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 7.7e-55 219.5 710 31.1
Duzib041G0283 Durio zibethinus HOM05D007378 ORTHO05D007577 1.3e-54 218.8 367 44.1
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 3.8e-54 217.2 672 32.1
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 5.0e-54 216.9 678 32.6
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 6.5e-54 216.5 679 32.3
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 7.2e-53 213.0 679 31.2
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 3.0e-51 207.6 305 47.5
Psat6g003040 Pisum sativum HOM05D007378 ORTHO05D007577 5.5e-45 186.8 604 32.5
PSO700G0360 Papaver somniferum HOM05D007378 ORTHO05D007577 9.4e-45 186.0 655 33.3
PSO170G0005 Papaver somniferum HOM05D007378 ORTHO05D007577 9.8e-42 176.0 615 32.8
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 3.7e-41 174.1 683 31.0
Oeu020868.1 Olea europaea HOM05D007378 ORTHO05D007577 3.5e-39 167.5 611 28.6
AUR62033831 Chenopodium quinoa HOM05D007378 ORTHO05D007577 8.0e-36 156.4 577 29.1
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 1.0e-35 156.0 208 48.6
SalBow7G4715 Salvia bowleyana HOM05D007378 ORTHO05D007577 3.0e-35 154.5 649 29.0
vmacro04350 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 9.8e-34 149.4 265 40.8
Lj4A25T50 Lonicera japonica HOM05D007378 ORTHO05D007577 7.8e-31 139.8 261 40.2
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 6.6e-30 136.7 694 28.5
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 6.6e-30 136.7 713 28.2
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 5.6e-29 133.7 717 28.6
AUR62035752 Chenopodium quinoa HOM05D007378 ORTHO05D007577 1.6e-28 132.1 605 26.1
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 2.8e-28 131.3 635 29.3
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 5.2e-27 127.1 745 26.8
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 8.9e-27 126.3 656 27.3
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 4.4e-26 124.0 714 28.2
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 5.4e-24 117.1 626 27.0
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 8.6e-22 109.8 704 26.3
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 3.6e-20 104.4 639 26.8
CSS0034917 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 8.3e-17 93.2 116 49.1
Atru.chr13.298 Acer truncatum HOM05D007378 ORTHO05D007577 3.2e-16 91.3 89 57.3
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 3.2e-16 91.3 546 26.4
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 7.0e-16 90.1 587 27.4
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 1.0e-14 86.3 584 26.4
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 3.9e-14 84.3 551 26.9
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 1.6e-12 79.0 531 27.5
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 5.2e-11 73.9 160 42.5
TAR381G0505 Trochodendron aralioides HOM05D007378 ORTHO05D007577 1.2e-10 72.8 102 52.9
SGA_v2.0_scaffold92G28233 Striga asiatica HOM05D007378 ORTHO05D007577 2.6e-10 71.6 629 24.8
Atru.chr13.297 Acer truncatum HOM05D007378 ORTHO05D007577 1.7e-09 68.9 111 47.7
Lsat_1_v5_gn_2_9361 Lactuca sativa HOM05D037282 ORTHO05D035104 2.9e-09 68.2 95 42.1
BcaC03g15614 Brassica carinata HOM05D010473 ORTHO05D007577 5.4e-08 63.9 369 26.0
A07p41260 Brassica napus HOM05D010473 ORTHO05D007577 2.1e-07 62.0 158 40.5
BraA07t31661Z Brassica rapa HOM05D010473 ORTHO05D007577 2.1e-07 62.0 158 40.5
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 2.7e-07 61.6 626 25.6
TPR.G31883 Trifolium pratense HOM05D007378 ORTHO05D007577 1.7e-06 58.9 69 46.4
BolC6t40007H Brassica oleracea HOM05D010473 ORTHO05D007577 2.3e-06 58.5 626 25.1
ATR0152G004 Amborella trichopoda HOM05D007378 ORTHO05D007577 5.1e-06 57.4 414 26.3


User provided reference genes

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