Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013942 Carpinus fangiana HOM05D007355 ORTHO05D009343 1.5e-43 179.1 87 100.0
Haze_22626 Corylus avellana HOM05D007355 ORTHO05D009343 2.3e-36 155.2 87 93.1
CiPaw.08G065900 Carya illinoinensis HOM05D007355 ORTHO05D009343 6.0e-29 130.6 93 76.3
QL02p011487 Quercus lobata HOM05D007355 ORTHO05D009343 5.6e-27 124.0 90 75.6
Thecc.08G043500 Theobroma cacao HOM05D007355 ORTHO05D009343 9.5e-27 123.2 89 76.4
Duzib093G0416 Durio zibethinus HOM05D007355 ORTHO05D009343 2.1e-26 122.1 89 75.3
Ciclev10003277m.g Citrus clementina HOM05D007355 ORTHO05D009343 1.8e-25 119.0 85 72.9
Manes.05G148200 Manihot esculenta HOM05D007355 ORTHO05D009343 2.3e-25 118.6 90 68.9
Gohir.D05G189650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 3.1e-25 118.2 90 75.6
Gorai.009G194900 Gossypium raimondii HOM05D007355 ORTHO05D009343 3.1e-25 118.2 90 75.6
Manes.18G014200 Manihot esculenta HOM05D007355 ORTHO05D009343 3.1e-25 118.2 92 68.5
COL.COLO4_26156 Corchorus olitorius HOM05D007355 ORTHO05D009343 4.0e-25 117.9 94 72.3
Potri.005G238400 Populus trichocarpa HOM05D007355 ORTHO05D009343 3.4e-24 114.8 87 70.1
Gorai.009G270200 Gossypium raimondii HOM05D007355 ORTHO05D009343 5.8e-24 114.0 90 70.0
Lalb_Chr14g0369841 Lupinus albus HOM05D007355 ORTHO05D009343 5.8e-24 114.0 85 67.1
Gohir.A05G257150 Gossypium hirsutum HOM05D007355 ORTHO05D009343 9.9e-24 113.2 90 70.0
Sabra05G0184200 Salix brachista HOM05D007355 ORTHO05D009343 9.9e-24 113.2 87 69.0
Glyma.06G024800 Glycine max HOM05D007355 ORTHO05D009343 1.3e-23 112.8 85 71.8
Gohir.A06G004700 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.3e-23 112.8 87 65.5
Glyma.04G024700 Glycine max HOM05D007355 ORTHO05D009343 1.7e-23 112.5 85 71.8
Gohir.D06G000500 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.7e-23 112.5 87 65.5
Gorai.010G004900 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.7e-23 112.5 87 65.5
PGSC0003DMG400009860 Solanum tuberosum HOM05D007355 ORTHO05D009343 1.7e-23 112.5 99 65.7
Gohir.A05G186732 Gossypium hirsutum HOM05D007355 ORTHO05D009343 2.2e-23 112.1 90 73.3
Solyc04g081380.1 Solanum lycopersicum HOM05D007355 ORTHO05D009343 2.2e-23 112.1 99 64.6
VMungo1309G0669 Vigna mungo HOM05D007355 ORTHO05D009343 2.2e-23 112.1 85 70.6
TAR625G0791 Trochodendron aralioides HOM05D007355 ORTHO05D009343 2.9e-23 111.7 87 67.8
arahy.Tifrunner.gnm1.ann1.Y2NNQI Arachis hypogaea HOM05D007355 ORTHO05D009343 3.7e-23 111.3 85 67.1
Gohir.D05G258650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.9e-23 110.9 90 68.9
arahy.Tifrunner.gnm1.ann1.PADY8Y Arachis hypogaea HOM05D007355 ORTHO05D009343 6.4e-23 110.5 87 66.7
PGR083G2600 Punica granatum HOM05D007355 ORTHO05D009343 6.4e-23 110.5 85 70.6
Cpa.g.sc26.34 Carica papaya HOM05D007355 ORTHO05D009343 2.4e-22 108.6 93 63.4
Ca_13424_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 2.7e-21 105.1 87 65.5
Ca_13425_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 2.7e-21 105.1 87 65.5
Phvul.009G016500 Phaseolus vulgaris HOM05D007355 ORTHO05D009343 3.5e-21 104.8 85 65.9
ClCG05G018320 Citrullus lanatus HOM05D007355 ORTHO05D009343 4.6e-21 104.4 74 75.7
FAN15G2202 Fragaria x ananassa HOM05D007355 ORTHO05D009343 4.6e-21 104.4 81 66.7
FAN27G0012 Fragaria x ananassa HOM05D007355 ORTHO05D009343 4.6e-21 104.4 81 66.7
FAN20G0162 Fragaria x ananassa HOM05D007355 ORTHO05D009343 6.0e-21 104.0 89 64.0
Lj5g0016063 Lotus japonicus HOM05D007355 ORTHO05D009343 1.7e-20 102.4 89 60.7
MD15G1013100 Malus domestica HOM05D007355 ORTHO05D009343 3.0e-20 101.7 94 58.5
Hma1.2p1_0638F.1_g193820 Hydrangea macrophylla HOM05D007355 ORTHO05D009343 5.1e-20 100.9 92 63.0
CiPaw.07G150900 Carya illinoinensis HOM05D007355 ORTHO05D009343 6.6e-20 100.5 74 75.7
CSS0013130 Camellia sinensis var. sinensis HOM05D007355 ORTHO05D009343 1.5e-19 99.4 92 63.0
Dinv39511 Davidia involucrata HOM05D007355 ORTHO05D009343 1.5e-19 99.4 76 65.8
Medtr1g025150 Medicago truncatula HOM05D007355 ORTHO05D009343 3.3e-19 98.2 82 63.4
SalBow7G4291 Salvia bowleyana HOM05D007355 ORTHO05D009343 7.3e-19 97.1 86 62.8
CsaV3_3G045820 Cucumis sativus L. HOM05D007355 ORTHO05D009343 9.5e-19 96.7 76 69.7
Lalb_Chr22g0354351 Lupinus albus HOM05D007355 ORTHO05D009343 1.2e-18 96.3 89 59.6
Prupe.1G366200 Prunus persica HOM05D007355 ORTHO05D009343 1.2e-18 96.3 101 57.4
Peaxi162Scf00400g00042 Petunia axillaris HOM05D007355 ORTHO05D009343 1.6e-18 95.9 97 60.8
Actinidia37930 Actinidia chinensis HOM05D007355 ORTHO05D009343 2.8e-18 95.1 79 68.4
MELO3C011006.2 Cucumis melo HOM05D007355 ORTHO05D009343 3.6e-18 94.7 90 61.1
Lj1g0016145 Lotus japonicus HOM05D007355 ORTHO05D009343 3.6e-18 94.7 86 62.8
Rhsim07G0246800 Rhododendron simsii HOM05D007355 ORTHO05D009343 4.7e-18 94.4 78 62.8
ClCG08G014360 Citrullus lanatus HOM05D007355 ORTHO05D009343 8.1e-18 93.6 87 63.2
Sed0019478 Sechium edule HOM05D007355 ORTHO05D009343 8.1e-18 93.6 73 68.5
Sed0024841 Sechium edule HOM05D007355 ORTHO05D009343 1.4e-17 92.8 81 64.2
Sc15g0005040 Simmondsia chinensis HOM05D007355 ORTHO05D009343 1.4e-17 92.8 91 60.4
Aqoxy5G01778 Aquilegia oxysepala HOM05D007355 ORTHO05D009343 3.1e-17 91.7 89 61.8
TPR.G26402 Trifolium pratense HOM05D007355 ORTHO05D009343 3.1e-17 91.7 83 62.7
CsaV3_2G029470 Cucumis sativus L. HOM05D007355 ORTHO05D009343 6.8e-17 90.5 85 60.0
Atru.chr13.303 Acer truncatum HOM05D007355 ORTHO05D009343 1.2e-16 89.7 79 67.1
CAN.G311.23 Capsicum annuum HOM05D007355 ORTHO05D009343 1.5e-16 89.4 68 69.1
Nn1g05885 Nelumbo nucifera HOM05D007355 ORTHO05D009343 1.5e-16 89.4 89 62.9
THA.LOC104814032 Tarenaya hassleriana HOM05D007355 ORTHO05D009343 9.9e-16 86.7 95 53.7
MBI05_g15356_MAGBIO Magnolia biondii HOM05D007355 ORTHO05D009343 1.3e-15 86.3 72 66.7
Eucgr.F01645 Eucalyptus grandis HOM05D007355 ORTHO05D009343 2.9e-15 85.1 73 67.1
DCAR_017465 Daucus carota HOM05D007355 ORTHO05D009343 3.8e-15 84.7 84 56.0
Thhalv10019842m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 1.9e-14 82.4 71 66.2
Aa31LG4G5940 Aethionema arabicum HOM05D007355 ORTHO05D009343 2.4e-14 82.0 73 63.0
Nn5g30158 Nelumbo nucifera HOM05D007355 ORTHO05D009343 2.4e-14 82.0 93 59.1
BcaC08g47049 Brassica carinata HOM05D007355 ORTHO05D009343 7.1e-14 80.5 87 59.8
Ah.11g039070 Amaranthus hybridus HOM05D007355 ORTHO05D009343 1.6e-13 79.3 83 54.2
C06p49660 Brassica napus HOM05D007355 ORTHO05D009343 1.6e-13 79.3 73 65.8
BolC6t40005H Brassica oleracea HOM05D007355 ORTHO05D009343 1.6e-13 79.3 73 65.8
A08p29560 Brassica napus HOM05D007355 ORTHO05D009343 2.1e-13 79.0 79 58.2
C08p19840 Brassica napus HOM05D007355 ORTHO05D009343 2.1e-13 79.0 79 58.2
BolC8t49623H Brassica oleracea HOM05D007355 ORTHO05D009343 2.1e-13 79.0 79 58.2
BraA08t34894Z Brassica rapa HOM05D007355 ORTHO05D009343 2.1e-13 79.0 79 58.2
BcaC07g39013 Brassica carinata HOM05D007355 ORTHO05D009343 2.7e-13 78.6 79 58.2
Lsat_1_v5_gn_2_9841 Lactuca sativa HOM05D007355 ORTHO05D009343 2.7e-13 78.6 95 47.4
Migut.C00824 Erythranthe guttata HOM05D007355 ORTHO05D009343 3.5e-13 78.2 103 51.5
AL1G32690 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 4.6e-13 77.8 77 55.8
Sp1g17750 Schrenkiella parvula HOM05D007355 ORTHO05D009343 6.0e-13 77.4 77 59.7
DCAR_013865 Daucus carota HOM05D007355 ORTHO05D009343 7.8e-13 77.0 98 49.0
A07p41240 Brassica napus HOM05D007355 ORTHO05D009343 1.0e-12 76.6 73 64.4
BraA07t31659Z Brassica rapa HOM05D007355 ORTHO05D009343 1.0e-12 76.6 73 64.4
BcaB03g14421 Brassica carinata HOM05D007355 ORTHO05D009343 1.3e-12 76.3 77 55.8
BcaB02g07039 Brassica carinata HOM05D007355 ORTHO05D009343 1.7e-12 75.9 75 62.7
CARHR020450 Cardamine hirsuta HOM05D007355 ORTHO05D009343 1.7e-12 75.9 77 57.1
Thhalv10009918m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 1.7e-12 75.9 77 57.1
Carub.0001s1949 Capsella rubella HOM05D007355 ORTHO05D009343 3.0e-12 75.1 75 57.3
BcaB03g14350 Brassica carinata HOM05D007355 ORTHO05D009343 3.9e-12 74.7 74 52.7
AT1G75717 Arabidopsis thaliana HOM05D007355 ORTHO05D009343 5.1e-12 74.3 82 54.9
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 8.7e-12 73.6 79 57.0
BcaC08g45561 Brassica carinata HOM05D007355 ORTHO05D009343 1.5e-11 72.8 84 57.1
Carub.0002s2256 Capsella rubella HOM05D007355 ORTHO05D009343 1.5e-11 72.8 72 55.6
CARHR069120 Cardamine hirsuta HOM05D007355 ORTHO05D009343 2.5e-11 72.0 76 60.5
AL2G35700 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 3.3e-11 71.6 81 53.1
C06p32480 Brassica napus HOM05D007355 ORTHO05D009343 2.1e-10 68.9 84 56.0
BolC6t38371H Brassica oleracea HOM05D007355 ORTHO05D009343 2.1e-10 68.9 84 56.0
BcaB03g12886 Brassica carinata HOM05D007355 ORTHO05D009343 3.6e-10 68.2 96 42.7
DCAR_009926 Daucus carota HOM05D007355 ORTHO05D009343 4.9e-07 57.8 86 45.3
ATR0627G001 Amborella trichopoda HOM05D007355 ORTHO05D009343 4.2e-06 54.7 75 45.3


User provided reference genes

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