Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013938 Carpinus fangiana HOM05D007166 ORTHO05D009039 4.1e-107 391.3 190 100.0
Haze_22621 Corylus avellana HOM05D007166 ORTHO05D009039 1.3e-52 210.3 185 62.2
Ciclev10002412m.g Citrus clementina HOM05D007166 ORTHO05D009039 1.3e-49 200.3 187 60.4
PGSC0003DMG400003776 Solanum tuberosum HOM05D007166 ORTHO05D009039 1.3e-49 200.3 190 55.3
QL02p011380 Quercus lobata HOM05D007166 ORTHO05D009039 1.1e-46 190.7 185 56.8
Nitab4.5_0001540g0050 Nicotiana tabacum HOM05D007166 ORTHO05D009039 4.0e-46 188.7 184 54.3
TWI56G1425 Tripterygium wilfordii HOM05D007166 ORTHO05D009039 7.1e-43 177.9 186 54.3
CiPaw.08G065500 Carya illinoinensis HOM05D007166 ORTHO05D009039 2.1e-42 176.4 186 58.1
Prupe.1G367000 Prunus persica HOM05D007166 ORTHO05D009039 1.8e-41 173.3 186 53.8
Duzib116G0210 Durio zibethinus HOM05D007166 ORTHO05D009039 1.1e-40 170.6 185 51.4
GSVIVG01009888001 Vitis vinifera HOM05D007166 ORTHO05D009039 1.9e-40 169.9 185 51.9
Gohir.A06G004800 Gossypium hirsutum HOM05D007166 ORTHO05D009039 1.3e-39 167.2 185 51.4
Gorai.010G005000 Gossypium raimondii HOM05D007166 ORTHO05D009039 1.6e-39 166.8 185 51.4
ClCG05G018350 Citrullus lanatus HOM05D007166 ORTHO05D009039 3.7e-39 165.6 186 52.2
Gohir.D06G000600 Gossypium hirsutum HOM05D007166 ORTHO05D009039 3.7e-39 165.6 185 51.4
CANSAT25G3739 Cannabis sativa HOM05D007166 ORTHO05D009039 6.2e-39 164.9 191 51.3
Duzib093G1587 Durio zibethinus HOM05D007166 ORTHO05D009039 1.1e-38 164.1 185 49.7
COL.COLO4_26159 Corchorus olitorius HOM05D007166 ORTHO05D009039 1.8e-38 163.3 186 50.5
Potri.002G023600 Populus trichocarpa HOM05D007166 ORTHO05D009039 4.0e-38 162.2 186 50.5
Thecc.08G042800 Theobroma cacao HOM05D007166 ORTHO05D009039 9.0e-38 161.0 185 49.7
Dinv31833 Davidia involucrata HOM05D007166 ORTHO05D009039 1.2e-37 160.6 186 52.2
MD15G1013500 Malus domestica HOM05D007166 ORTHO05D009039 1.5e-37 160.2 186 52.2
RcHm_v2.0_Chr6g0302691 Rosa chinensis HOM05D007166 ORTHO05D009039 1.5e-37 160.2 185 51.9
Cc10_g01790 Coffea canephora HOM05D007166 ORTHO05D009039 2.6e-37 159.5 185 45.9
MELO3C003759.2 Cucumis melo HOM05D007166 ORTHO05D009039 2.6e-37 159.5 185 50.8
CsaV3_3G045770 Cucumis sativus L. HOM05D007166 ORTHO05D009039 3.4e-37 159.1 185 50.3
Sabra02G0019200 Salix brachista HOM05D007166 ORTHO05D009039 3.4e-37 159.1 186 50.5
Atru.chr13.311 Acer truncatum HOM05D007166 ORTHO05D009039 4.5e-37 158.7 191 48.7
FvH4_2g38630 Fragaria vesca HOM05D007166 ORTHO05D009039 7.6e-37 157.9 186 51.1
FAN20G1945 Fragaria x ananassa HOM05D007166 ORTHO05D009039 6.5e-36 154.8 193 50.3
MD08G1014000 Malus domestica HOM05D007166 ORTHO05D009039 8.4e-36 154.5 186 50.0
Sed0018016 Sechium edule HOM05D007166 ORTHO05D009039 8.4e-36 154.5 182 49.5
Potri.005G237800 Populus trichocarpa HOM05D007166 ORTHO05D009039 1.1e-35 154.1 187 47.6
TAR628G0810 Trochodendron aralioides HOM05D007166 ORTHO05D009039 1.1e-35 154.1 189 49.7
Peaxi162Scf00438g00619 Petunia axillaris HOM05D007166 ORTHO05D009039 3.2e-35 152.5 185 49.7
Phvul.001G007500 Phaseolus vulgaris HOM05D007166 ORTHO05D009039 9.3e-35 151.0 187 49.2
CAN.G311.15 Capsicum annuum HOM05D007166 ORTHO05D009039 2.1e-34 149.8 185 48.1
PGR031G2037 Punica granatum HOM05D007166 ORTHO05D009039 2.1e-34 149.8 187 50.3
VMungo0647G2551 Vigna mungo HOM05D007166 ORTHO05D009039 2.7e-34 149.4 187 49.2
Glyma.14G218200 Glycine max HOM05D007166 ORTHO05D009039 3.5e-34 149.1 185 50.3
Sopen04g034940 Solanum pennellii HOM05D007166 ORTHO05D009039 1.3e-33 147.1 185 45.4
Lj4A797T62 Lonicera japonica HOM05D007166 ORTHO05D009039 5.1e-33 145.2 189 46.0
Oeu007334.1 Olea europaea HOM05D007166 ORTHO05D009039 6.7e-33 144.8 185 45.9
Solyc04g081320.4 Solanum lycopersicum HOM05D007166 ORTHO05D009039 8.7e-33 144.4 185 44.9
Lalb_Chr22g0354371 Lupinus albus HOM05D007166 ORTHO05D009039 4.3e-32 142.1 187 47.6
CSS0019896 Camellia sinensis var. sinensis HOM05D007166 ORTHO05D009039 1.6e-31 140.2 185 47.0
Migut.C00807 Erythranthe guttata HOM05D007166 ORTHO05D009039 1.6e-31 140.2 188 47.9
Nn5g29333 Nelumbo nucifera HOM05D007166 ORTHO05D009039 1.6e-31 140.2 187 48.7
MSTRG.1201 Avicennia marina HOM05D007166 ORTHO05D009039 3.7e-31 139.0 185 45.9
Eucgr.F00601 Eucalyptus grandis HOM05D007166 ORTHO05D009039 3.7e-31 139.0 189 48.1
Glyma.17G257400 Glycine max HOM05D007166 ORTHO05D009039 3.7e-31 139.0 185 48.1
SGA_v2.0_scaffold92G28245 Striga asiatica HOM05D007166 ORTHO05D009039 1.4e-30 137.1 192 45.3
FAN15G1492 Fragaria x ananassa HOM05D007166 ORTHO05D009039 3.1e-30 136.0 224 42.0
EL10Ac5g11627 Beta vulgaris HOM05D007166 ORTHO05D009039 6.9e-30 134.8 183 45.9
THA.LOC104813791 Tarenaya hassleriana HOM05D007166 ORTHO05D009039 6.9e-30 134.8 184 46.7
Manes.18G014600 Manihot esculenta HOM05D007166 ORTHO05D009039 9.0e-30 134.4 156 53.8
TPR.G34359 Trifolium pratense HOM05D007166 ORTHO05D009039 1.0e-28 131.0 186 46.8
AUR62037091 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.7e-28 130.2 176 44.9
Actinidia15414 Actinidia chinensis HOM05D007166 ORTHO05D009039 3.8e-28 129.0 189 43.9
unitig_46.g17964 Utricularia gibba HOM05D007166 ORTHO05D009039 5.0e-28 128.6 185 45.9
Medtr1g024840 Medicago truncatula HOM05D007166 ORTHO05D009039 8.4e-28 127.9 185 45.4
Rhsim06G0022200 Rhododendron simsii HOM05D007166 ORTHO05D009039 2.5e-27 126.3 185 43.8
AT1G75690 Arabidopsis thaliana HOM05D007166 ORTHO05D009039 3.2e-27 125.9 183 44.3
PSO170G1901 Papaver somniferum HOM05D007166 ORTHO05D009039 3.2e-27 125.9 168 46.4
Thhalv10019268m.g Eutrema salsugineum HOM05D007166 ORTHO05D009039 7.2e-27 124.8 183 44.8
PSO700G0103 Papaver somniferum HOM05D007166 ORTHO05D009039 7.2e-27 124.8 165 46.1
A07p41210 Brassica napus HOM05D007166 ORTHO05D009039 9.3e-27 124.4 190 42.1
Lj5g0017261 Lotus japonicus HOM05D007166 ORTHO05D009039 9.3e-27 124.4 225 39.1
BolC6t40002H Brassica oleracea HOM05D007166 ORTHO05D009039 4.6e-26 122.1 182 42.3
Sp5g30800 Schrenkiella parvula HOM05D007166 ORTHO05D009039 7.9e-26 121.3 183 43.7
arahy.Tifrunner.gnm1.ann1.MS74EG Arachis hypogaea HOM05D007166 ORTHO05D009039 1.3e-25 120.6 194 43.8
DCAR_017474 Daucus carota HOM05D007166 ORTHO05D009039 1.8e-25 120.2 186 44.1
BraA07t31656Z Brassica rapa HOM05D007166 ORTHO05D009039 2.3e-25 119.8 184 42.4
CARHR069090 Cardamine hirsuta HOM05D007166 ORTHO05D009039 2.3e-25 119.8 183 43.7
C06p49630 Brassica napus HOM05D007166 ORTHO05D009039 3.9e-25 119.0 188 41.0
Carub.0002s2253 Capsella rubella HOM05D007166 ORTHO05D009039 6.7e-25 118.2 184 42.4
Os03g0244000 Oryza sativa ssp. japonica HOM05D007166 ORTHO05D009039 8.7e-25 117.9 168 42.9
BcaC08g47053 Brassica carinata HOM05D007166 ORTHO05D009039 1.1e-24 117.5 181 41.4
Lsat_1_v5_gn_9_46261 Lactuca sativa HOM05D007166 ORTHO05D009039 1.5e-24 117.1 190 41.6
arahy.Tifrunner.gnm1.ann1.74SAHL Arachis hypogaea HOM05D007166 ORTHO05D009039 3.3e-24 115.9 192 43.8
Aa31LG4G5920 Aethionema arabicum HOM05D007166 ORTHO05D009039 5.7e-24 115.2 178 41.0
MBI09_g08444_MAGBIO Magnolia biondii HOM05D007166 ORTHO05D009039 7.4e-24 114.8 114 50.9
BcaB05g24933 Brassica carinata HOM05D007166 ORTHO05D009039 2.8e-23 112.8 171 44.4
BraA02t07050Z Brassica rapa HOM05D007166 ORTHO05D009039 1.1e-22 110.9 182 40.7
ATR0912G003 Amborella trichopoda HOM05D007166 ORTHO05D009039 1.8e-22 110.2 53 88.7
Cpa.g.sc1059.4 Carica papaya HOM05D007166 ORTHO05D009039 2.4e-22 109.8 84 71.4
C02p33780 Brassica napus HOM05D007166 ORTHO05D009039 3.1e-22 109.4 182 41.2
A02p20150 Brassica napus HOM05D007166 ORTHO05D009039 4.1e-22 109.0 182 40.1
AL2G35670 Arabidopsis lyrata HOM05D007166 ORTHO05D009039 5.3e-22 108.6 184 42.9
BolC2t09326H Brassica oleracea HOM05D007166 ORTHO05D009039 6.9e-22 108.2 182 41.2
AUR62036485 Chenopodium quinoa HOM05D007166 ORTHO05D009039 1.2e-21 107.5 185 37.3
AagrBONN_evm.TU.Sc2ySwM_369.321 Anthoceros agrestis HOM05D007166 ORTHO05D009039 5.9e-21 105.1 154 38.3
HanXRQChr05g0146521 Helianthus annuus HOM05D007166 ORTHO05D009039 5.9e-21 105.1 187 42.8
Zm00001eb081060 Zea mays HOM05D007166 ORTHO05D009039 7.7e-21 104.8 181 39.8
BcaC03g15610 Brassica carinata HOM05D007166 ORTHO05D009039 1.3e-20 104.0 181 40.3
CDE02G4515 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 1.3e-20 104.0 152 42.1
ECA232G5036 Erigeron canadensis HOM05D007166 ORTHO05D009039 6.5e-20 101.7 201 37.3
HPP92_015209 Vanilla planifolia HOM05D007166 ORTHO05D009039 8.5e-20 101.3 187 40.1
Pp3c22_16100 Physcomitrium patens HOM05D007166 ORTHO05D009039 4.6e-18 95.5 152 35.5
Pp3s104_40 Physcomitrium patens HOM05D007166 ORTHO05D009039 2.3e-17 93.2 140 37.1
Thecc.09G255600 Theobroma cacao HOM05D007166 ORTHO05D009039 1.1e-16 90.9 91 56.0
Mapoly0005s0157 Marchantia polymorpha HOM05D007166 ORTHO05D009039 5.7e-16 88.6 158 36.7
SMO165G0060 Selaginella moellendorffii HOM05D007166 ORTHO05D009039 2.2e-15 86.7 153 35.3
Hund05201 Selenicereus undatus HOM05D007166 ORTHO05D009039 2.8e-15 86.3 53 81.1
CDE02G3586 Ceratophyllum demersum HOM05D007166 ORTHO05D009039 1.4e-14 84.0 143 41.3
CBR_g44435 Chara braunii HOM05D007166 ORTHO05D009039 1.2e-10 70.9 153 31.4
EL10Ac4g08279 Beta vulgaris HOM05D007166 ORTHO05D009039 1.6e-10 70.5 75 54.7
FAN27G0088 Fragaria x ananassa HOM05D007166 ORTHO05D009039 2.1e-10 70.1 58 63.8
HPP92_015221 Vanilla planifolia HOM05D007166 ORTHO05D009039 1.0e-09 67.8 87 49.4


User provided reference genes

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