Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 9.7e-150 533.5 275 100.0
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 6.8e-95 351.3 281 72.2
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 3.2e-92 342.4 231 80.1
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 4.7e-88 328.6 231 74.0
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 1.7e-85 320.1 232 72.4
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.6e-83 313.5 234 70.1
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 4.3e-81 305.4 232 69.0
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 4.0e-79 298.9 236 67.4
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.4e-77 291.6 236 66.9
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 8.4e-77 291.2 237 64.6
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.4e-76 290.4 234 63.7
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.4e-76 289.7 234 66.7
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 2.4e-76 289.7 235 66.4
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.1e-76 288.9 233 67.4
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.7e-75 286.2 235 66.4
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 6.6e-74 281.6 204 70.6
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.1e-73 280.8 234 62.4
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 2.5e-73 279.6 234 65.0
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.3e-73 279.3 234 65.0
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.3e-73 279.3 234 65.0
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 5.6e-73 278.5 234 63.2
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 7.3e-73 278.1 234 63.7
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 9.6e-73 277.7 213 68.1
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-72 277.3 233 63.9
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 2.1e-72 276.6 235 63.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 2.1e-72 276.6 234 65.0
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.8e-72 276.2 225 65.3
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 2.8e-72 276.2 231 64.9
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.8e-72 276.2 235 63.8
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 3.6e-72 275.8 234 59.8
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 4.7e-72 275.4 229 62.4
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 6.2e-72 275.0 232 63.4
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 6.2e-72 275.0 234 62.8
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 8.1e-72 274.6 234 64.1
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.1e-71 274.2 207 66.2
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.1e-71 274.2 228 61.4
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.1e-71 274.2 234 64.1
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.8e-71 273.5 228 63.6
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.8e-71 273.5 232 64.2
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 6.8e-71 271.6 231 59.3
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 8.9e-71 271.2 231 62.3
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 3.4e-70 269.2 234 61.1
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 7.6e-70 268.1 227 62.1
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.2e-69 266.5 235 61.7
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.2e-69 266.5 228 60.1
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 3.8e-69 265.8 234 63.2
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 4.9e-69 265.4 199 68.3
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.4e-68 263.8 195 70.8
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.4e-68 263.8 204 67.2
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.4e-68 263.1 228 62.3
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 3.2e-68 262.7 235 60.4
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 3.2e-68 262.7 234 62.0
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 4.2e-68 262.3 232 60.8
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 5.4e-68 261.9 234 61.5
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.1e-68 261.5 234 59.0
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.2e-67 260.8 235 61.7
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.2e-67 260.8 192 67.7
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.6e-67 260.4 232 60.3
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 4.6e-67 258.8 234 58.1
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 3.9e-66 255.8 231 56.7
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 5.1e-66 255.4 234 57.7
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.1e-65 254.2 236 58.1
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 3.3e-65 252.7 201 65.2
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 7.3e-65 251.5 196 62.8
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.1e-64 248.1 232 60.3
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 8.1e-64 248.1 236 54.2
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.1e-63 247.7 230 56.1
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.8e-63 246.9 192 64.6
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.4e-63 246.5 199 67.3
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 5.3e-63 245.4 228 56.6
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 6.9e-63 245.0 228 55.3
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.5e-62 243.8 244 54.5
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.0e-62 243.4 194 61.9
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.4e-62 242.7 246 56.5
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 5.8e-62 241.9 231 55.4
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 5.8e-62 241.9 246 56.5
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.3e-61 240.7 224 56.7
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.7e-61 240.4 230 55.7
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.2e-61 240.0 246 56.1
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 3.8e-61 239.2 194 60.3
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 6.4e-61 238.4 196 58.7
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 8.4e-61 238.0 232 54.7
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.1e-60 237.7 196 61.2
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 2.4e-60 236.5 194 58.8
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 4.2e-60 235.7 231 54.5
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 9.3e-60 234.6 237 54.4
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 1.6e-59 233.8 228 55.3
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.6e-59 233.8 231 53.2
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.1e-59 233.4 199 58.3
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 2.1e-59 233.4 231 53.2
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 4.6e-59 232.3 194 57.7
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 6.0e-59 231.9 231 54.1
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.0e-58 231.1 238 54.2
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.3e-58 230.7 194 57.2
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 5.1e-58 228.8 195 56.9
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 5.1e-58 228.8 195 56.9
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 5.1e-58 228.8 194 56.7
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.6e-58 228.4 264 51.5
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.1e-57 227.6 199 57.8
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.5e-57 227.3 199 59.3
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.9e-57 226.9 195 56.4
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 5.6e-57 225.3 199 56.3
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 5.6e-57 225.3 249 50.6
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 9.6e-57 224.6 188 57.4
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 2.8e-56 223.0 246 52.0
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 8.1e-56 221.5 257 49.4
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.8e-55 220.3 232 53.9
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 9.0e-55 218.0 229 52.4
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 9.0e-55 218.0 232 53.4
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 4.5e-54 215.7 196 55.1
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 5.8e-54 215.3 232 54.7
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 7.6e-54 214.9 187 61.5
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.7e-53 213.8 152 71.1
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 5.5e-52 208.8 226 50.0
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.0e-50 203.0 161 64.0
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.1e-47 194.5 184 52.7
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.4e-47 194.1 184 52.2
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.4e-47 194.1 142 69.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 3.4e-46 189.5 191 52.9
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 8.4e-45 184.9 196 51.0
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.4e-44 184.1 123 76.4
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 7.9e-43 178.3 234 45.3
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 3.0e-42 176.4 234 44.4
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 3.9e-42 176.0 149 61.7
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 2.5e-41 173.3 231 46.3
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 3.8e-37 159.5 207 47.8
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 6.1e-35 152.1 134 59.7
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 9.7e-33 144.8 256 38.3
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.3e-32 144.4 154 50.6
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.1e-28 131.3 188 42.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.9e-28 130.6 199 40.7
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.8e-26 124.0 246 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.3e-26 123.6 184 42.4
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.5e-25 120.9 185 42.2
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 2.8e-24 116.7 116 51.7
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.4e-23 113.6 135 50.4
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.1e-23 111.7 74 78.4
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.3e-16 91.3 88 54.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 7.0e-15 85.5 72 55.6
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.1e-12 78.2 99 44.4
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 2.6e-09 67.0 163 31.9
FAN27G0705 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.8e-08 63.5 104 37.5
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.8e-08 63.5 77 49.4
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 8.2e-08 62.0 212 26.9
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.8e-07 60.8 77 46.8
SEGI_28115 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.2e-06 58.2 81 49.4
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 5.9e-06 55.8 60 56.7


User provided reference genes

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