Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 4.8e-103 377.9 194 100.0
Haze_22602 Corylus avellana HOM05D000624 ORTHO05D000495 3.4e-40 169.1 89 98.9
CSS0049768 Camellia sinensis var. sinensis HOM05D007073 ORTHO05D008855 1.2e-34 150.6 86 89.5
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 1.2e-34 150.6 126 63.5
CANSAT25G0010 Cannabis sativa HOM05D007073 ORTHO05D008855 3.6e-34 149.1 85 88.2
Prupe.1G369500 Prunus persica HOM05D007073 ORTHO05D008855 3.6e-34 149.1 125 65.6
CiPaw.07G153100 Carya illinoinensis HOM05D007073 ORTHO05D008855 8.1e-34 147.9 89 84.3
Dinv31819 Davidia involucrata HOM05D007073 ORTHO05D008855 1.8e-33 146.7 89 84.3
QL02p010904 Quercus lobata HOM05D007073 ORTHO05D008855 1.8e-33 146.7 89 85.4
RcHm_v2.0_Chr6g0272121 Rosa chinensis HOM05D007073 ORTHO05D008855 1.8e-33 146.7 86 86.0
Atru.chr13.338 Acer truncatum HOM05D007073 ORTHO05D008855 4.0e-33 145.6 89 82.0
TAR628G0116 Trochodendron aralioides HOM05D007073 ORTHO05D008855 4.0e-33 145.6 89 83.1
FvH4_5g30190 Fragaria vesca HOM05D007073 ORTHO05D008855 5.2e-33 145.2 86 84.9
FAN13G2867 Fragaria x ananassa HOM05D007073 ORTHO05D008855 5.2e-33 145.2 86 84.9
GSVIVG01009840001 Vitis vinifera HOM05D007073 ORTHO05D008855 5.2e-33 145.2 89 80.9
RcHm_v2.0_Chr6g0302381 Rosa chinensis HOM05D007073 ORTHO05D008855 8.9e-33 144.4 86 84.9
Hma1.2p1_0773F.1_g216240 Hydrangea macrophylla HOM05D007073 ORTHO05D008855 3.4e-32 142.5 83 88.0
Rhsim06G0025500 Rhododendron simsii HOM05D000624 ORTHO05D000495 7.5e-32 141.4 86 84.9
RhsimUnG0148500 Rhododendron simsii HOM05D007073 ORTHO05D008855 7.5e-32 141.4 86 84.9
COL.COLO4_26179 Corchorus olitorius HOM05D007073 ORTHO05D008855 1.3e-31 140.6 89 78.7
AUR62014408 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.7e-31 140.2 93 79.6
Lj4g0003370 Lotus japonicus HOM05D007073 ORTHO05D008855 1.7e-31 140.2 85 84.7
Thecc.08G038900 Theobroma cacao HOM05D007073 ORTHO05D008855 1.7e-31 140.2 89 80.9
TWI56G0686 Tripterygium wilfordii HOM05D007073 ORTHO05D008855 1.7e-31 140.2 89 78.7
Glyma.08G113800 Glycine max HOM05D007073 ORTHO05D008855 3.7e-31 139.0 89 78.7
vmacro21707 Vaccinium macrocarpon HOM05D007073 ORTHO05D008855 4.9e-31 138.7 86 81.4
Cfa016880 Carpinus fangiana HOM05D000194 ORTHO05D000069 6.4e-31 138.3 81 86.4
Haze_19925 Corylus avellana HOM05D000194 ORTHO05D000069 6.4e-31 138.3 81 86.4
Duzib093G1738 Durio zibethinus HOM05D007073 ORTHO05D008855 6.4e-31 138.3 89 75.3
Nn5g29254 Nelumbo nucifera HOM05D007073 ORTHO05D008855 6.4e-31 138.3 89 79.8
Ciclev10002853m.g Citrus clementina HOM05D007073 ORTHO05D008855 8.3e-31 137.9 91 73.6
CANSAT11G0546 Cannabis sativa HOM05D007073 ORTHO05D008855 1.1e-30 137.5 85 81.2
PGR031G0624 Punica granatum HOM05D007073 ORTHO05D008855 1.4e-30 137.1 89 78.7
Gohir.A01G112900 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.9e-30 136.7 89 76.4
HanXRQChr02g0044001 Helianthus annuus HOM05D007073 ORTHO05D008855 1.9e-30 136.7 89 79.8
Cc04_g14740 Coffea canephora HOM05D007073 ORTHO05D008855 3.2e-30 136.0 83 84.3
Glyma.05G155900 Glycine max HOM05D007073 ORTHO05D008855 4.1e-30 135.6 89 77.5
VMungo0251G2135 Vigna mungo HOM05D007073 ORTHO05D008855 5.4e-30 135.2 85 80.0
Sabra05G0182000 Salix brachista HOM05D007073 ORTHO05D008855 7.1e-30 134.8 87 77.0
Migut.C00802 Erythranthe guttata HOM05D007073 ORTHO05D008855 9.2e-30 134.4 89 78.7
Potri.005G235800 Populus trichocarpa HOM05D007073 ORTHO05D008855 9.2e-30 134.4 87 77.0
AUR62019145 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.2e-29 134.0 84 82.1
Gohir.D01G101000 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.2e-29 134.0 89 74.2
PGSC0003DMG400003718 Solanum tuberosum HOM05D007073 ORTHO05D008855 1.2e-29 134.0 80 83.8
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 1.6e-29 133.7 105 69.5
Eucgr.L01253 Eucalyptus grandis HOM05D007073 ORTHO05D008855 2.7e-29 132.9 83 78.3
Oeu054729.1 Olea europaea HOM05D007073 ORTHO05D008855 2.7e-29 132.9 89 76.4
Eucgr.H01040 Eucalyptus grandis HOM05D007073 ORTHO05D008855 3.5e-29 132.5 83 77.1
Solyc04g081160.3 Solanum lycopersicum HOM05D007073 ORTHO05D008855 3.5e-29 132.5 80 82.5
Sopen04g034780 Solanum pennellii HOM05D007073 ORTHO05D008855 3.5e-29 132.5 80 82.5
CDE08G0828 Ceratophyllum demersum HOM05D007073 ORTHO05D008855 6.0e-29 131.7 84 78.6
MELO3C010995.2 Cucumis melo HOM05D007073 ORTHO05D008855 6.0e-29 131.7 84 78.6
Lsat_1_v5_gn_1_16141 Lactuca sativa HOM05D007073 ORTHO05D008855 6.0e-29 131.7 89 76.4
Cc02_g29940 Coffea canephora HOM05D007073 ORTHO05D008855 7.8e-29 131.3 83 80.7
Sed0011824 Sechium edule HOM05D007073 ORTHO05D008855 7.8e-29 131.3 83 79.5
Ca_17949_v3 Cicer arietinum L. HOM05D007073 ORTHO05D008855 1.0e-28 131.0 86 75.6
unitig_32.g11146 Utricularia gibba HOM05D007073 ORTHO05D008855 1.0e-28 131.0 89 78.7
CANSAT11G2499 Cannabis sativa HOM05D007073 ORTHO05D008855 1.3e-28 130.6 82 80.5
ECA247G1834 Erigeron canadensis HOM05D007073 ORTHO05D008855 1.3e-28 130.6 82 79.3
Peaxi162Scf00287g01620 Petunia axillaris HOM05D007073 ORTHO05D008855 1.3e-28 130.6 80 80.0
Peaxi162Scf01591g00005 Petunia axillaris HOM05D007073 ORTHO05D008855 1.3e-28 130.6 80 80.0
EL10Ac1g00450 Beta vulgaris HOM05D007073 ORTHO05D008855 1.7e-28 130.2 84 79.8
Nitab4.5_0005185g0010 Nicotiana tabacum HOM05D007073 ORTHO05D008855 1.7e-28 130.2 79 79.7
Phvul.002G236200 Phaseolus vulgaris HOM05D007073 ORTHO05D008855 1.7e-28 130.2 85 78.8
Cfa001894 Carpinus fangiana HOM05D000273 ORTHO05D000069 3.0e-28 129.4 77 83.1
Cfa013965 Carpinus fangiana HOM05D000273 ORTHO05D000069 3.0e-28 129.4 77 83.1
SGA_v2.0_scaffold92G28274 Striga asiatica HOM05D007073 ORTHO05D008855 3.0e-28 129.4 89 76.4
TPR.G24371 Trifolium pratense HOM05D007073 ORTHO05D008855 3.0e-28 129.4 83 79.5
ClCG08G014440 Citrullus lanatus HOM05D007073 ORTHO05D008855 5.1e-28 128.6 83 77.1
Os03g0127000 Oryza sativa ssp. japonica HOM05D007073 ORTHO05D008855 5.1e-28 128.6 84 77.4
Psat7g072280 Pisum sativum HOM05D007073 ORTHO05D008855 5.1e-28 128.6 82 79.3
Cfa004210 Carpinus fangiana HOM05D000273 ORTHO05D000069 6.6e-28 128.3 77 83.1
Thhalv10009135m.g Eutrema salsugineum HOM05D007073 ORTHO05D008855 6.6e-28 128.3 83 75.9
Manes.18G016450 Manihot esculenta HOM05D007073 ORTHO05D008855 8.6e-28 127.9 81 77.8
PSO675G5408 Papaver somniferum HOM05D007073 ORTHO05D008855 8.6e-28 127.9 82 79.3
Actinidia26593 Actinidia chinensis HOM05D007073 ORTHO05D008855 1.1e-27 127.5 86 80.2
CAN.G1271.5 Capsicum annuum HOM05D007073 ORTHO05D008855 1.1e-27 127.5 80 80.0
CsaV3_2G029360 Cucumis sativus L. HOM05D007073 ORTHO05D008855 1.1e-27 127.5 84 76.2
A09p35370 Brassica napus HOM05D007073 ORTHO05D008855 1.5e-27 127.1 83 75.9
AL1G45120 Arabidopsis lyrata HOM05D007073 ORTHO05D008855 1.9e-27 126.7 83 74.7
CARHR030330 Cardamine hirsuta HOM05D007073 ORTHO05D008855 1.9e-27 126.7 83 74.7
BcaB07g32745 Brassica carinata HOM05D007073 ORTHO05D008855 2.5e-27 126.3 83 75.9
BcaC05g27117 Brassica carinata HOM05D007073 ORTHO05D008855 2.5e-27 126.3 83 75.9
BcaC05g27119 Brassica carinata HOM05D007073 ORTHO05D008855 2.5e-27 126.3 83 75.9
C05p29960 Brassica napus HOM05D007073 ORTHO05D008855 2.5e-27 126.3 83 75.9
C05p29970 Brassica napus HOM05D007073 ORTHO05D008855 2.5e-27 126.3 83 75.9
BolC5t31732H Brassica oleracea HOM05D007073 ORTHO05D008855 2.5e-27 126.3 83 75.9
BolC5t31736H Brassica oleracea HOM05D007073 ORTHO05D008855 2.5e-27 126.3 83 75.9
PSO541G6379 Papaver somniferum HOM05D007073 ORTHO05D008855 2.5e-27 126.3 82 76.8
Zm00001eb001980 Zea mays HOM05D007073 ORTHO05D008855 2.5e-27 126.3 85 77.6
Aa31LG6G9870 Aethionema arabicum HOM05D007073 ORTHO05D008855 3.3e-27 125.9 82 76.8
Carub.0001s2918 Capsella rubella HOM05D007073 ORTHO05D008855 3.3e-27 125.9 83 74.7
Zm00001eb403590 Zea mays HOM05D007073 ORTHO05D008855 3.3e-27 125.9 85 75.3
MD08G1016500 Malus domestica HOM05D007073 ORTHO05D008855 4.3e-27 125.6 83 78.3
SalBow7G2056 Salvia bowleyana HOM05D007073 ORTHO05D008855 4.3e-27 125.6 89 70.8
Sp1g26740 Schrenkiella parvula HOM05D007073 ORTHO05D008855 4.3e-27 125.6 83 74.7
Lalb_Chr12g0205331 Lupinus albus HOM05D007073 ORTHO05D008855 5.6e-27 125.2 89 73.0
SGA_v2.0_scaffold92G28275 Striga asiatica HOM05D007073 ORTHO05D008855 5.6e-27 125.2 89 75.3
MD15G1015600 Malus domestica HOM05D007073 ORTHO05D008855 7.3e-27 124.8 89 71.9
Medtr8g085700 Medicago truncatula HOM05D007073 ORTHO05D008855 9.5e-27 124.4 83 77.1
THA.LOC104810648 Tarenaya hassleriana HOM05D007073 ORTHO05D008855 1.6e-26 123.6 91 71.4
AT1G30845 Arabidopsis thaliana HOM05D007073 ORTHO05D008855 2.1e-26 123.2 83 75.9
MSTRG.1215 Avicennia marina HOM05D007073 ORTHO05D008855 2.1e-26 123.2 89 70.8
Cfa004289 Carpinus fangiana HOM05D000273 ORTHO05D000069 2.1e-26 123.2 77 80.5
HPP92_025607 Vanilla planifolia HOM05D007073 ORTHO05D008855 2.8e-26 122.9 82 73.2
arahy.Tifrunner.gnm1.ann1.0LW32C Arachis hypogaea HOM05D007073 ORTHO05D008855 4.7e-26 122.1 90 74.4
Sc26g0003150 Simmondsia chinensis HOM05D007073 ORTHO05D008855 2.0e-24 116.7 82 73.2
arahy.Tifrunner.gnm1.ann1.F1G2D9 Arachis hypogaea HOM05D007073 ORTHO05D008855 7.6e-24 114.8 113 60.2
ATR0945G003 Amborella trichopoda HOM05D007073 ORTHO05D008855 9.9e-24 114.4 81 74.1
Cfa016016 Carpinus fangiana HOM05D000273 ORTHO05D000198 1.7e-23 113.6 103 61.2
Cfa018494 Carpinus fangiana HOM05D000500 ORTHO05D000367 1.9e-22 110.2 67 80.6
CiPaw.10G029500 Carya illinoinensis HOM05D000194 ORTHO05D000069 1.9e-22 110.2 82 72.0
Cfa012215 Carpinus fangiana HOM05D000273 ORTHO05D000069 4.1e-22 109.0 65 80.0
Cfa006267 Carpinus fangiana HOM05D000273 ORTHO05D000069 5.4e-22 108.6 65 80.0
Cfa012493 Carpinus fangiana HOM05D000273 ORTHO05D000069 7.1e-22 108.2 63 84.1
Actinidia37317 Actinidia chinensis HOM05D007073 ORTHO05D008855 3.0e-20 102.8 62 80.6
CiPaw.09G033800 Carya illinoinensis HOM05D000194 ORTHO05D000069 8.6e-20 101.3 82 67.1
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 8.9e-17 91.3 52 84.6
arahy.Tifrunner.gnm1.ann1.JR36LC Arachis hypogaea HOM05D007073 ORTHO05D008855 3.4e-16 89.4 58 77.6
Eucgr.L01259 Eucalyptus grandis HOM05D007073 ORTHO05D008855 4.4e-16 89.0 52 80.8
SEGI_10735 Sequoiadendron giganteum HOM05D007073 ORTHO05D008855 2.9e-15 86.3 87 57.5
C05p30020 Brassica napus HOM05D007073 ORTHO05D008855 8.4e-15 84.7 85 52.9
Actinidia04603 Actinidia chinensis HOM05D007073 ORTHO05D008855 2.7e-13 79.7 58 74.1
Eucgr.H01037 Eucalyptus grandis HOM05D007073 ORTHO05D008855 4.6e-13 79.0 51 72.5
Mapoly0121s0038 Marchantia polymorpha HOM05D007073 ORTHO05D008855 3.0e-12 76.3 87 50.6
Cpa.g.sc85.120 Carica papaya HOM05D000194 ORTHO05D000069 1.1e-11 74.3 85 52.9
MD13G1087600 Malus domestica HOM05D007073 ORTHO05D008855 1.1e-11 74.3 51 74.5
BolC5t31739H Brassica oleracea HOM05D007073 ORTHO05D008855 3.6e-10 69.3 66 56.1
TAR623G1219 Trochodendron aralioides HOM05D000194 ORTHO05D000069 3.6e-10 69.3 78 48.7
ClCG10G017310 Citrullus lanatus HOM05D000194 ORTHO05D000069 1.4e-09 67.4 123 42.3
CsaV3_3G039100 Cucumis sativus L. HOM05D000194 ORTHO05D000069 1.8e-09 67.0 120 40.8
Pp3c8_14860 Physcomitrium patens HOM05D007073 ORTHO05D008855 3.1e-09 66.2 85 55.3
QL07p022241 Quercus lobata HOM05D000194 ORTHO05D000069 3.1e-09 66.2 109 45.9
RcHm_v2.0_Chr3g0480751 Rosa chinensis HOM05D000194 ORTHO05D000069 5.3e-09 65.5 84 50.0
MELO3C009653.2 Cucumis melo HOM05D000194 ORTHO05D000069 6.9e-09 65.1 120 39.2
CANSAT80G1730 Cannabis sativa HOM05D000194 ORTHO05D000069 9.0e-09 64.7 85 55.3
DCAR_017499 Daucus carota HOM05D007073 ORTHO05D008855 1.2e-08 64.3 36 91.7
GSVIVG01033350001 Vitis vinifera HOM05D000194 ORTHO05D000069 2.0e-08 63.5 89 47.2
TWI77G0641 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 2.6e-08 63.2 81 46.9
Hma1.2p1_0856F.1_g229080 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 3.4e-08 62.8 82 45.1
TWI53G0530 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 5.8e-08 62.0 81 44.4
Prupe.7G070200 Prunus persica HOM05D000194 ORTHO05D000069 1.7e-07 60.5 82 50.0
TAR369G0121 Trochodendron aralioides HOM05D000194 ORTHO05D000069 3.8e-07 59.3 92 41.3
Cfa014371 Carpinus fangiana HOM05D005981 ORTHO05D007551 4.2e-06 55.8 28 82.1
CDE07G0313 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 4.2e-06 55.8 81 45.7
MBI01_g40601_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 9.3e-06 54.7 78 47.4


User provided reference genes

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