Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.2e-120 435.6 225 100.0
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.0e-109 398.7 223 91.9
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 6.8e-93 344.4 224 78.6
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 2.0e-92 342.8 223 77.6
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 9.8e-92 340.5 224 76.8
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.7e-91 339.7 193 88.6
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 2.4e-90 335.9 223 75.8
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 4.1e-90 335.1 224 75.9
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.2e-89 333.6 223 77.1
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.6e-89 333.2 224 75.4
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 4.6e-89 331.6 224 72.8
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 6.0e-89 331.3 222 74.3
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 7.8e-89 330.9 224 72.8
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.0e-88 330.5 224 72.8
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.9e-87 326.2 224 71.9
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.6e-87 324.7 224 72.3
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.3e-85 319.3 223 70.9
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 4.0e-85 318.5 224 71.0
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 5.2e-85 318.2 223 70.4
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 6.8e-85 317.8 221 71.9
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.9e-85 317.4 223 70.4
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.9e-85 317.4 223 70.4
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 8.9e-85 317.4 224 69.6
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 2.0e-84 316.2 224 69.2
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 2.0e-84 316.2 225 70.2
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.6e-84 315.8 223 70.4
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 4.4e-84 315.1 217 73.3
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 5.8e-84 314.7 217 72.8
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 7.5e-84 314.3 221 71.9
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.7e-83 313.2 224 68.8
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.7e-83 313.2 223 69.1
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.2e-83 312.8 223 69.1
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 2.9e-83 312.4 223 69.5
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 4.9e-83 311.6 223 70.9
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 4.9e-83 311.6 220 69.1
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 4.9e-83 311.6 224 68.3
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 8.3e-83 310.8 224 67.9
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.1e-82 310.5 225 70.2
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.4e-82 310.1 221 69.7
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.9e-82 309.7 224 67.9
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 3.2e-82 308.9 222 67.1
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 4.1e-82 308.5 224 68.8
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 4.1e-82 308.5 224 67.0
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 4.1e-82 308.5 224 67.9
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 9.2e-82 307.4 224 67.4
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 9.2e-82 307.4 223 68.2
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.2e-81 307.0 222 66.7
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.6e-81 306.6 223 67.7
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.6e-81 306.6 220 70.0
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.7e-81 305.8 225 68.4
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 2.7e-81 305.8 220 67.7
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.7e-81 305.8 219 70.3
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 3.5e-81 305.4 221 67.9
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 4.6e-81 305.1 223 67.7
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 1.3e-80 303.5 225 67.1
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.7e-80 303.1 217 68.7
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 3.9e-80 302.0 223 68.2
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 5.1e-80 301.6 222 67.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 6.6e-80 301.2 224 68.3
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.5e-79 300.1 225 66.7
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.3e-79 298.9 220 67.7
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.3e-79 298.9 220 67.7
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 4.3e-79 298.5 224 65.6
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 1.2e-78 297.0 224 67.9
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 2.1e-78 296.2 252 59.9
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.8e-78 295.8 220 66.8
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.8e-78 295.8 224 67.9
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 3.6e-78 295.4 220 66.8
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.4e-77 293.5 222 65.3
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.8e-77 293.1 220 66.4
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.3e-77 292.7 220 64.5
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 3.1e-77 292.4 220 64.5
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.1e-77 292.4 224 65.2
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 6.8e-77 291.2 221 64.7
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.2e-76 290.4 222 65.3
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 1.5e-76 290.0 220 63.6
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 1.5e-76 290.0 220 65.5
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.4e-76 288.5 220 64.1
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 7.6e-76 287.7 221 67.4
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.3e-75 287.0 224 66.1
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.2e-75 286.2 218 64.2
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 4.9e-75 285.0 251 59.4
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.9e-75 285.0 215 66.5
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.9e-75 285.0 215 66.5
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 6.4e-75 284.6 224 62.9
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 4.1e-74 282.0 220 60.5
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 5.4e-74 281.6 218 61.9
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 5.4e-74 281.6 218 61.9
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 5.4e-74 281.6 198 68.7
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 7.1e-74 281.2 218 61.5
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.6e-73 280.0 219 63.9
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.1e-73 279.6 220 62.3
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 2.7e-73 279.3 218 61.5
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.7e-73 279.3 217 60.8
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 4.6e-73 278.5 220 60.5
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 4.6e-73 278.5 218 61.0
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 4.6e-73 278.5 218 61.0
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.3e-72 276.9 218 61.5
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 2.3e-72 276.2 218 60.6
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.3e-72 276.2 250 58.0
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 5.1e-72 275.0 219 63.0
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 5.1e-72 275.0 214 64.5
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 6.6e-72 274.6 221 60.2
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 6.6e-72 274.6 221 60.2
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 6.6e-72 274.6 282 53.2
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.9e-71 273.1 221 59.7
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.9e-71 273.1 221 59.7
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.9e-71 273.1 221 59.7
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.3e-71 271.9 224 59.8
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 4.3e-71 271.9 197 68.5
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.1e-70 269.6 221 62.9
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 6.2e-70 268.1 225 64.0
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.4e-69 266.9 220 60.5
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 2.4e-69 266.2 220 62.3
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.8e-69 264.6 224 61.6
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.0e-68 263.1 186 68.8
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 2.0e-68 263.1 188 69.1
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 4.9e-67 258.5 223 58.3
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 4.9e-67 258.5 223 58.3
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 1.1e-66 257.3 193 65.8
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.2e-65 253.8 218 62.8
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 2.7e-65 252.7 213 62.4
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.0e-64 250.8 222 59.0
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.1e-62 243.0 189 61.9
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-60 237.3 224 55.8
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.6e-60 236.1 196 59.2
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 1.9e-58 229.9 200 56.0
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 7.1e-58 228.0 205 55.6
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 2.7e-57 226.1 150 71.3
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.0e-56 224.2 160 67.5
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.3e-54 217.2 161 65.8
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.1e-53 214.2 209 53.1
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.8e-53 213.4 211 52.1
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 5.3e-53 211.8 150 69.3
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 2.0e-52 209.9 174 60.3
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.6e-52 209.5 233 53.2
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.0e-49 198.4 222 49.5
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 5.1e-48 195.3 178 56.7
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 5.6e-47 191.8 214 46.3
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-44 184.1 223 48.0
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.0e-44 183.3 216 44.4
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 4.9e-43 178.7 213 41.8
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 7.9e-41 171.4 146 51.4
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.3e-38 164.1 90 91.1
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 2.6e-36 156.4 119 66.4
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 6.5e-35 151.8 118 64.4
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.1e-34 151.0 117 62.4
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 3.2e-34 149.4 178 43.8
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-30 137.5 86 75.6
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.0e-28 130.2 124 53.2
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 6.1e-25 118.6 148 41.9
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.8e-24 117.1 209 32.5
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 2.4e-21 106.7 74 70.3
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.7e-19 100.5 151 41.7
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.7e-19 100.5 151 41.7
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 2.2e-19 100.1 65 76.9
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.0e-15 87.0 75 56.0
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 7.4e-15 85.1 81 54.3
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.8e-11 72.8 71 52.1
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 1.6e-09 67.4 60 65.0
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 8.8e-08 61.6 45 64.4


User provided reference genes

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